Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4264 185 9e-42 >seq4264 Length=4713 Score = 185 bits (204), Expect = 9e-42 Identities = 390/576 (68%), Gaps = 8/576 (1%) Strand=Plus/Minus Query 93733 TTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCCGAGCGACCG 93792 ||||| || || ||| ||| |||||||||||||| | || |||| ||||||||| Sbjct 3411 TTCAAGACCCTCGAGCGGTCATACCTCCTCAAGATCAACAACAAGGTTGTTGAGCGACCG 3352 Query 93793 CACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCGAATGTT-TT 93851 || || ||||| ||||| |||||| |||| || |||||| | ||||| | || || Sbjct 3351 CAACACCTGCTCATGCGGGTCGCCGTCGGCATCCACGGCGAGGACATTGAGCGTGCGATT 3292 Query 93852 GCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACCCTGTTCAA 93911 | | | ||| ||||| | || | || ||| | ||||| || ||||| Sbjct 3291 GAGACGTATCACT-ACATGTCGAACCGCCACTTCACGCACGCCTCGCCGACGCTCTTCAA 3233 Query 93912 CGCGGGGACCCCGGTGC-CA--CAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGA 93968 ||| || || |||| || ||| | | || || |||||| | | |||| ||| Sbjct 3232 CGCCGGCACA---GTGCACAACCAGCTCGCGTCCTGCTTCCTGGTCTGTATGAAGGACGA 3176 Query 93969 CTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGG 94028 ||| ||| || || | ||| | |||||| ||||||||| ||||| || ||||| Sbjct 3175 CTCGATCGAGGGCATCTACGAGACGCTCAAGAACTGTGCGATGATCTCGAAGACGGCGGG 3116 Query 94029 GGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAA 94088 || ||||| ||| ||||| || | ||||| | || || ||||| |||||| || Sbjct 3115 CGGCATCGGCCTCAACATCCACAACATTCGTGCGACCGGGTCGTACATTGCCGGTACGAA 3056 Query 94089 TGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGT 94148 |||| || ||||| |||| || ||||| || | |||| || |||| |||||||| Sbjct 3055 CGGCATGTCGAACGGTATCGTGCCCATGCTTCGCGCCTTCGACGCGACGGCCCGCTACGT 2996 Query 94149 GGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGC 94208 |||||||| || | | ||| | ||||| |||| || ||||| |||||||| Sbjct 2995 TGACCAGGGCGGCAACAAACGACCCGGTGCCTTCGCCATCTACCTTGAGCCGTGGCACGC 2936 Query 94209 GGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAG 94268 ||||| | ||| | ||||| || |||||||||||||| || | ||| | Sbjct 2935 CGACGTTTTTGACTTCCTTGACCTCCGTAAGAACCACGGCAAGGAAGAATCCCGTGCCCG 2876 Query 94269 AGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTT 94304 ||||||||||| || || ||| | || ||||| || Sbjct 2875 CGACCTCTTCTATGCGCTGTGGATACCGGACCTCTT 2840 Score = 125 bits (138), Expect = 7e-24 Identities = 215/310 (69%), Gaps = 19/310 (6%) Strand=Plus/Minus Query 94528 GCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATT 94587 |||||||||||||||||| || | ||| ||||||| || || |||||||| ||||| Sbjct 2516 GCCAAGTCCAACCAGCAGAACTTGGGGACGATCAAGTCGTCCAACCTGTGCACGGAGATC 2457 Query 94588 GTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCC 94647 | ||||| |||| || ||||| | || || || ||||||||||||||| ||| || Sbjct 2456 ATGGAGTACTCTTCGCCTGACGAAACCGCCGTTTGCAACCTGGGCTCCATCGCGCTGCCC 2397 Query 94648 ACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAAC 94707 || || | ||| | || | | |||| | | ||| |||| || Sbjct 2396 ACCTTTAT-CGAAA-----AC---------GGTGTGTTCAACTTCGAGATGCTTCACAAG 2352 Query 94708 TTCGCGGGAAGG--ATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCG 94765 | || ||||| | | ||||| ||||| || | ||||||||||||| ||| || Sbjct 2351 GT--CGTGAAGGTCCTTGCGGTGAACTTGAACCGGATCATCGACAAGAACTACTATCCTA 2294 Query 94766 TCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTT 94825 |||||||||| || ||| ||| || || || || |||||||||||| ||||||| Sbjct 2293 TCCCGGAGGCCAAGCGCTCGAACATGCGCCACCGCCCGATCGGCATCGGCTGCCAGGGTC 2234 Query 94826 TCGCGGACGC 94835 |||| ||||| Sbjct 2233 TCGCCGACGC 2224 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/138 (77%), Gaps = 13/138 (9%) Strand=Plus/Minus Query 95289 CGCCAACGG---CTCCGTCCAGAACATC--CCGCAAATACCGGAGGACATCAAGGCGCTC 95343 ||||||||| ||| ||||| ||||| | ||| | ||||| || |||||||||||| Sbjct 1723 CGCCAACGGAGGCTCGATCCAGCACATCGACGGCA--TCCCGGACGAGATCAAGGCGCTC 1666 Query 95344 TACAAGACCGTGTGGGAGATCCCGC---AGCGCGTGATACTCGACCACGCGGCCGCCCGC 95400 ||||||||||| ||||||||| ||| |||||||| || || | ||| || | ||| Sbjct 1665 TACAAGACCGTCTGGGAGATCTCGCAGAAGCGCGTG---CTGGAGCTCGCTGCGGACCGG 1609 Query 95401 GGGCCCTTCATCTGCCAG 95418 || ||||||| |||||| Sbjct 1608 GGCGCCTTCATTTGCCAG 1591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494668230068440