Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq522 113 4e-20 seq1375 109 5e-19 seq523 109 5e-19 seq230 95.1 1e-14 >seq522 Length=1154 Score = 113 bits (124), Expect = 4e-20 Identities = 175/246 (71%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 52312 ATGCGTTCGAGCACGTGCCGTGCGTT---CGCAAAAAGGCTCAGTGGGCAATGAAGTGGA 52368 ||||| ||||| | | || ||||| ||||| |||| ||||||| | | ||||| Sbjct 623 ATGCGATCGAGACCATCCCCTGCGTGAAGCGCAA---GGCTGAGTGGGCGCTCACGTGGA 679 Query 52369 TCGAGAGCGA-CACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGC 52427 || | ||| || || || | | ||||||| | || || |||||| ||||||||| Sbjct 680 TCAACGACGAGCAGAGCT-CGTTCGGCGAGCGCCTCGTTGCGTTCGCCGCCGTCGAGGGC 738 Query 52428 GTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCC 52487 | || || || ||| || ||| ||||||| | | || | | || | |||||| Sbjct 739 ATCTTCTTCTCGGGCTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCC 798 Query 52488 GGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCG 52547 ||||| || ||| ||||||| | || ||||||||||| || |||||||||||||||| Sbjct 799 GGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCACACGGACTTTGCC 858 Query 52548 TGCCTC 52553 |||||| Sbjct 859 TGCCTC 864 >seq1375 Length=30983 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | || | | | |||||||| |||||||||||||| Sbjct 15705 CCGCCGCGGAGACGGAGGACGAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAA 15764 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||| || || |||| |||| |||||||| ||||| ||||| Sbjct 15765 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGG 15824 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| || || | |||| || | |||||| ||||||| || Sbjct 15825 ATGCCCTCCTTATCCTGGATCTTCGCCTTGACATTG-TCGATAGTGTCGCTCGACTCGAC 15883 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | ||| | ||| || || || || || || || || ||||||||| Sbjct 15884 CTCAAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 15932 >seq523 Length=1154 Score = 109 bits (120), Expect = 5e-19 Identities = 174/246 (71%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 52312 ATGCGTTCGAGCACGTGCCGTGCGTT---CGCAAAAAGGCTCAGTGGGCAATGAAGTGGA 52368 ||||| ||||| | | || ||||| ||||| |||| ||||||| | | ||||| Sbjct 623 ATGCGATCGAGACCATCCCCTGCGTGAAGCGCAA---GGCTGAGTGGGCGCTCACGTGGA 679 Query 52369 TCGAGAGCGA-CACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGC 52427 || | ||| || || || | | ||||||| | || || |||||| ||||||||| Sbjct 680 TCAACGACGAGCAGAGCT-CGTTCGGCGAGCGCCTCGTTGCGTTCGCCGCCGTCGAGGGC 738 Query 52428 GTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCC 52487 | || || || ||| || || ||||||| | | || | | || | |||||| Sbjct 739 ATCTTCTTCTCGGGCTCGTTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCC 798 Query 52488 GGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCG 52547 ||||| || ||| ||||||| | || ||||||||||| || |||||||||||||||| Sbjct 799 GGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCACACGGACTTTGCC 858 Query 52548 TGCCTC 52553 |||||| Sbjct 859 TGCCTC 864 >seq230 Length=49901 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||||| ||||||||| || || || | | Sbjct 21858 GACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCA 21799 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| ||||| || || || || || ||||| ||| | || | || | Sbjct 21798 AAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTC-CTGAATCTTGGCCTTGAC 21740 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| ||||||| ||||||| || | || || || ||||| || | Sbjct 21739 GTTG-TCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCT 21681 Query 138599 TTACAAAAATCTGCATGG 138616 | || || || ||||||| Sbjct 21680 TCACGAAGATTTGCATGG 21663 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| ||| | || | || | | |||||||| || ||||||||||| Sbjct 22737 GCCGCCGCGCAGACGGAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 22678 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||||||| || || |||| |||| || ||||| ||||| || || Sbjct 22677 AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGG 22618 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | ||||| | ||||| || Sbjct 22617 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 22558 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| ||| | ||| || || |||| || || || || ||||||||| Sbjct 22557 CTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTGACGAAGATCTGCATG 22509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496207259044080