Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq231 116 4e-21 seq523 111 1e-19 seq1375 105 6e-18 seq522 105 6e-18 seq230 100 3e-16 >seq231 Length=27061 Score = 116 bits (128), Expect = 4e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || |||||||| || | ||||| || || ||||| || || Sbjct 331 CGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 272 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 || |||| | |||||||| ||||| || ||||||||||||||| ||| ||| ||| Sbjct 271 CGCAAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTT 212 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 || ||||| ||| |||||| | |||||| |||| ||| | || ||||||||||| | Sbjct 211 GACGTTGT-CGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCG 153 Query 127095 TTTTTACAAAAATCTGCATGG 127115 | || || || || ||||||| Sbjct 152 TCTTCACGAAGATTTGCATGG 132 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||| | ||||| ||| || ||||| ||||| Sbjct 896 GTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCG 837 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || ||||||||||||||| ||| ||| |||| Sbjct 836 GCGAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 777 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||||| |||||| || | || | ||| ||||| |||| || Sbjct 776 ACATTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGTCAATGTC 717 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 716 TTGACGAAGATCTGCATG 699 >seq523 Length=1154 Score = 111 bits (122), Expect = 1e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 47059 TCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACG 47118 |||||| ||| ||||||||| | ||||| |||||||| | | || || | ||| Sbjct 629 TCGAGACCATCCCCTGCGTGAAGCGCAAGGCTGAGTGGGCGCTCACGTGGATCAACGACG 688 Query 47119 AAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCT 47178 | | | | | | ||| || | | || |||||| |||||||||| ||||||||| Sbjct 689 AGCAGAGCTCGTTCGGCGAGCGCCTCGTTGCGTTCGCCGCCGTCGAGGGCATCTTCTTCT 748 Query 47179 CGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGT 47238 ||||| || ||| | || || | | || | ||| | |||||||||||||| | Sbjct 749 CGGGCTCGTTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCACCT 808 Query 47239 TTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC 47294 | ||||||||| |||||| | ||||| ||| ||||||| |||||||||| ||| Sbjct 809 TCTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCACACGGACTTTGCCTGCCTC 864 >seq1375 Length=30983 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| || | ||||| || || ||||| ||||| Sbjct 15735 GTGGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCG 15794 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| |||||||| ||||||||||| ||| ||| ||| |||| Sbjct 15795 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTTCGCCTTG 15854 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | |||||| || | || | ||| ||||| || || || Sbjct 15855 ACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGCGTGATCGTCTTGCCCGTGAGGGTC 15914 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 15915 TTGACGAAGATCTGCATG 15932 >seq522 Length=1154 Score = 105 bits (116), Expect = 6e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 47059 TCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACG 47118 |||||| ||| ||||||||| | ||||| |||||||| | | || || | ||| Sbjct 629 TCGAGACCATCCCCTGCGTGAAGCGCAAGGCTGAGTGGGCGCTCACGTGGATCAACGACG 688 Query 47119 AAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCT 47178 | | | | | | ||| || | | || |||||| |||||||||| ||||||||| Sbjct 689 AGCAGAGCTCGTTCGGCGAGCGCCTCGTTGCGTTCGCCGCCGTCGAGGGCATCTTCTTCT 748 Query 47179 CGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGT 47238 ||||| || || | || || | | || | ||| | |||||||||||||| | Sbjct 749 CGGGCTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCACCT 808 Query 47239 TTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC 47294 | ||||||||| |||||| | ||||| ||| ||||||| |||||||||| ||| Sbjct 809 TCTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCACACGGACTTTGCCTGCCTC 864 >seq230 Length=49901 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| || || ||||| || || Sbjct 22706 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 22647 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || ||||||||||||||| ||| || |||| Sbjct 22646 GCGAAGATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 22587 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||||| |||||| |||| || | ||| ||||| |||| || Sbjct 22586 ACGTTG-TCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCCGTCAACGT 22528 Query 127096 TTTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 22527 CTTGACGAAGATCTGCATG 22509 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| || | || || || || ||||| || || Sbjct 21862 CGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCC 21803 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 || |||| | |||||||| || || || ||||||||||||||| || || ||| Sbjct 21802 CGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTT 21743 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 || ||||| ||| ||||| | |||||| |||| ||| | || ||||||||||| | Sbjct 21742 GACGTTGT-CGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCG 21684 Query 127095 TTTTTACAAAAATCTGCATGG 127115 | || || || || ||||||| Sbjct 21683 TCTTCACGAAGATTTGCATGG 21663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475447965917360