Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07-
25] 8,889 sequences; 36,136,062 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq231 116 4e-21
seq523 111 1e-19
seq1375 105 6e-18
seq522 105 6e-18
seq230 100 3e-16
>seq231
Length=27061
Score = 116 bits (128), Expect = 4e-21
Identities = 148/201 (74%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975
||| ||||| || || |||||||| || | ||||| || || ||||| || ||
Sbjct 331 CGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 272
Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035
|| |||| | |||||||| ||||| || ||||||||||||||| ||| ||| |||
Sbjct 271 CGCAAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTT 212
Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094
|| ||||| ||| |||||| | |||||| |||| ||| | || ||||||||||| |
Sbjct 211 GACGTTGT-CGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCG 153
Query 127095 TTTTTACAAAAATCTGCATGG 127115
| || || || || |||||||
Sbjct 152 TCTTCACGAAGATTTGCATGG 132
Score = 109 bits (120), Expect = 5e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || |||||||| | ||||| ||| || ||||| |||||
Sbjct 896 GTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCG 837
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | |||||||| || || || ||||||||||||||| ||| ||| ||||
Sbjct 836 GCGAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 777
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||||| |||||| || | || | ||| ||||| |||| ||
Sbjct 776 ACATTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGTCAATGTC 717
Query 127097 TTTACAAAAATCTGCATG 127114
|| || || |||||||||
Sbjct 716 TTGACGAAGATCTGCATG 699
>seq523
Length=1154
Score = 111 bits (122), Expect = 1e-19
Identities = 166/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 47059 TCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACG 47118
|||||| ||| ||||||||| | ||||| |||||||| | | || || | |||
Sbjct 629 TCGAGACCATCCCCTGCGTGAAGCGCAAGGCTGAGTGGGCGCTCACGTGGATCAACGACG 688
Query 47119 AAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCT 47178
| | | | | | ||| || | | || |||||| |||||||||| |||||||||
Sbjct 689 AGCAGAGCTCGTTCGGCGAGCGCCTCGTTGCGTTCGCCGCCGTCGAGGGCATCTTCTTCT 748
Query 47179 CGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGT 47238
||||| || ||| | || || | | || | ||| | |||||||||||||| |
Sbjct 749 CGGGCTCGTTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCACCT 808
Query 47239 TTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC 47294
| ||||||||| |||||| | ||||| ||| ||||||| |||||||||| |||
Sbjct 809 TCTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCACACGGACTTTGCCTGCCTC 864
>seq1375
Length=30983
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||| || | ||||| || || ||||| |||||
Sbjct 15735 GTGGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCG 15794
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | |||||||| |||||||| ||||||||||| ||| ||| ||| ||||
Sbjct 15795 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTTCGCCTTG 15854
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||| | |||||| || | || | ||| ||||| || || ||
Sbjct 15855 ACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGCGTGATCGTCTTGCCCGTGAGGGTC 15914
Query 127097 TTTACAAAAATCTGCATG 127114
|| || || |||||||||
Sbjct 15915 TTGACGAAGATCTGCATG 15932
>seq522
Length=1154
Score = 105 bits (116), Expect = 6e-18
Identities = 165/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 47059 TCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACG 47118
|||||| ||| ||||||||| | ||||| |||||||| | | || || | |||
Sbjct 629 TCGAGACCATCCCCTGCGTGAAGCGCAAGGCTGAGTGGGCGCTCACGTGGATCAACGACG 688
Query 47119 AAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCT 47178
| | | | | | ||| || | | || |||||| |||||||||| |||||||||
Sbjct 689 AGCAGAGCTCGTTCGGCGAGCGCCTCGTTGCGTTCGCCGCCGTCGAGGGCATCTTCTTCT 748
Query 47179 CGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGT 47238
||||| || || | || || | | || | ||| | |||||||||||||| |
Sbjct 749 CGGGCTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCACCT 808
Query 47239 TTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC 47294
| ||||||||| |||||| | ||||| ||| ||||||| |||||||||| |||
Sbjct 809 TCTCCAACGAGCTCATCTCGCGCGACGAGGGCATGCACACGGACTTTGCCTGCCTC 864
>seq230
Length=49901
Score = 100 bits (110), Expect = 3e-16
Identities = 143/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| || | ||||| || || ||||| || ||
Sbjct 22706 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 22647
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | |||||||| || || || ||||||||||||||| ||| || ||||
Sbjct 22646 GCGAAGATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 22587
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| ||||||| |||||| |||| || | ||| ||||| |||| ||
Sbjct 22586 ACGTTG-TCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCCGTCAACGT 22528
Query 127096 TTTTACAAAAATCTGCATG 127114
|| || || |||||||||
Sbjct 22527 CTTGACGAAGATCTGCATG 22509
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975
||| ||||| || || || ||||| || | || || || || ||||| || ||
Sbjct 21862 CGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCC 21803
Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035
|| |||| | |||||||| || || || ||||||||||||||| || || |||
Sbjct 21802 CGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTT 21743
Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094
|| ||||| ||| ||||| | |||||| |||| ||| | || ||||||||||| |
Sbjct 21742 GACGTTGT-CGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCG 21684
Query 127095 TTTTTACAAAAATCTGCATGG 127115
| || || || || |||||||
Sbjct 21683 TCTTCACGAAGATTTGCATGG 21663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475447965917360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |