Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1375 138 3e-27 seq231 138 3e-27 seq230 129 1e-24 seq464 102 2e-16 seq1288 100 7e-16 seq1287 100 7e-16 >seq1375 Length=30983 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||||||||||||||| || | |||||| || | | ||| | ||||| Sbjct 15492 AGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCCGAAAGAGTGCGACCATCC 15551 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| | |||||||||||| || || || ||| ||| Sbjct 15552 TCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGCGGGATACCCTCTTTGTCC 15611 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| || | |||||| | | || || ||||||||||| ||| Sbjct 15612 TGGATCTTCGCCTTCACGTTGTCAATGGTGTCCGAGGACTCGACTTCCAACGTGATGGTC 15671 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 15672 TTGCCGGTGAGCGTCTTGACGAAGATCTG 15700 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||||||| || | ||||||||| | | ||| | || || Sbjct 15720 AGGACGAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 15779 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||||||||||||||||||||| ||| || || || ||| Sbjct 15780 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCC 15839 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||||| | | || || || | |||||||||| Sbjct 15840 TGGATCTTCGCCTTGACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGCGTGATCGTC 15899 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || || Sbjct 15900 TTGCCCGTGAGGGTCTTGACGAAGATCTG 15928 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| ||||||||||| |||| ||||||||| | | ||| | ||||| Sbjct 15948 AGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCATCC 16007 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| || |||||||| || ||||||||||| || Sbjct 16008 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGG 16048 >seq231 Length=27061 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| |||||||||||||| |||| |||||| || | | || | ||||| Sbjct 911 AGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCC 852 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||||||||||||||||||||| || || || || ||| Sbjct 851 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 792 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||||| | | || || |||| |||||||||| Sbjct 791 TGGATCTTCGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTC 732 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || || || || || || Sbjct 731 TTGCCCGTCAATGTCTTGACGAAGATCTG 703 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 |||||||| ||||||||||| |||| |||||||| | | ||| | || || || ||| Sbjct 339 AGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGC 280 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || || ||||| || ||||||||||| || || || || ||||| ||| Sbjct 279 TGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATC 220 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||| ||| |||| |||||| | | || || || | ||||| ||||| || Sbjct 219 TTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCG 160 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || ||||| Sbjct 159 GTCAGCGTCTTCACGAAGATTTG 137 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| ||||| || || |||||||| |||| ||||||||| | | || Sbjct 692 CGCAGGCGCAGGACGAGGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTA 633 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 | || || || |||||||| || ||||| ||||| ||||||||||| ||| Sbjct 632 CGCCCGTCCTCGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGA 582 >seq230 Length=49901 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| |||||||||||||| |||| ||||||||| | | || | || || Sbjct 22721 AGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 22662 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||| ||||||||||| || || || || ||| Sbjct 22661 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 22602 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||||| | | || || || | |||||||||| Sbjct 22601 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTC 22542 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || || || || || || Sbjct 22541 TTGCCCGTCAACGTCTTGACGAAGATCTG 22513 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 |||||||| ||||||||||| |||| ||||||||| | | || | || || || ||| Sbjct 21870 AGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGC 21811 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || || ||||| || ||||||||||| || || || || ||||||||| Sbjct 21810 TGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATC 21751 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||| ||| |||| ||||| | | || || || | ||||| ||||| || Sbjct 21750 TTGGCCTTGACGTTGTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCG 21691 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || ||||| Sbjct 21690 GTCAGCGTCTTCACGAAGATTTG 21668 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| ||||| || ||||||||||| |||| ||||||||| | | || Sbjct 22502 CGGAGGCGCAGGACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTA 22443 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 | || || || |||||||| || ||||||||||| ||||||||||| ||| Sbjct 22442 CGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGA 22392 Score = 95.1 bits (104), Expect = 3e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| |||||||||||||| |||| ||||||||| | | || | || || Sbjct 22211 AGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 22152 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 || |||||||| || ||||||||||| ||||||||||| ||| Sbjct 22151 TCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGA 22110 >seq464 Length=19301 Score = 102 bits (112), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||||||||||||||| |||| ||||||||| | | ||| | || || Sbjct 3600 AGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 3659 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| || ||||||||||| ||||||||||| || Sbjct 3660 TCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGG 3700 >seq1288 Length=8444 Score = 100 bits (110), Expect = 7e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| |||||||| |||||||||||||||| ||||||||| | || Sbjct 541 CGCAGGCGCAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTG 482 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || || |||||||| ||||||||||| || ||||||||||| || Sbjct 481 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGG 432 >seq1287 Length=7882 Score = 100 bits (110), Expect = 7e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| |||||||| |||||||||||||||| ||||||||| | || Sbjct 542 CGCAGGCGCAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTG 483 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || || |||||||| ||||||||||| || ||||||||||| || Sbjct 482 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGG 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178787332250563