Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq231 170 2e-37 seq230 156 5e-33 seq1375 149 7e-31 seq1288 104 3e-17 seq1287 104 3e-17 seq464 104 3e-17 >seq231 Length=27061 Score = 170 bits (188), Expect = 2e-37 Identities = 155/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| || |||||||| |||| |||||||||||||| || || Sbjct 325 CTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCAAA 266 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||||| ||| | || |||||||||| ||||||| ||||| ||| Sbjct 265 GATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 207 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || || || | |||||||| ||||| |||||||| || | Sbjct 206 TGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTCA 147 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 146 CGAAGATTTGCAT 134 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || || ||||| | || ||||||||||| |||||||| Sbjct 891 CTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 832 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | ||| | || |||||||||| ||||||| ||||| | Sbjct 831 GATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 772 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || |||| |||||| || |||||||||| || || || Sbjct 771 GTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGTCAATGTCTTGAC 712 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 711 GAAGATCTGCAT 700 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || ||| |||| |||||||||||||| ||||| Sbjct 663 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTACGCCCGTCCTCGAGCTGCTTGCCCGCGAA 604 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 || | |||||||||||||| Sbjct 603 AATGAGGCGCTGCTGGTCGG 584 >seq230 Length=49901 Score = 156 bits (172), Expect = 5e-33 Identities = 152/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || |||| |||||||||||||| || || Sbjct 21856 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCAAA 21797 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | ||| | || |||||||||| ||||| ||||| ||| Sbjct 21796 GATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGT 21738 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||||||||| || || || | |||||||| ||||| |||||||| || | Sbjct 21737 TGTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTCA 21678 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 21677 CGAAGATTTGCAT 21665 Score = 152 bits (168), Expect = 6e-32 Identities = 151/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 22701 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 22642 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | ||| | || |||||||||| |||||| ||||| ||| Sbjct 22641 GATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 22583 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||| || |||||||||| ||| || | Sbjct 22582 TGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTGA 22523 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 22522 CGAAGATCTGCAT 22510 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || |||||| ||||| |||||||| || || ||||| |||| || Sbjct 22209 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 22150 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 |||||||||||| ||||| || | |||||||||||||| Sbjct 22149 GAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGG 22112 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || || |||| || |||||| ||||| |||||||| || || || ||| || Sbjct 22496 CGCAGGACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTACGCCCG 22437 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 || |||||||||||||| ||||| || | |||||||||||||| Sbjct 22436 TCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGG 22394 >seq1375 Length=30983 Score = 149 bits (164), Expect = 7e-31 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || |||||||| |||| ||||||||||| |||||||| Sbjct 15740 CTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 15799 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | || |||||| ||| ||||||| ||||| | Sbjct 15800 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTTCGCCTTGACATT 15859 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||||||||| || || || | |||||| || |||||||| || || || || Sbjct 15860 GTCGATAGTGTCGCTCGACTCGACCTCAAGCGTGATCGTCTTGCCCGTGAGGGTCTTGAC 15919 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 15920 GAAGATCTGCAT 15931 Score = 134 bits (148), Expect = 2e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| || || |||||||| | || |||||||||||||| ||||| Sbjct 15512 CTCCTTCTGAATGTTGTAATCCGAAAGAGTGCGACCATCCTCGAGCTGCTTGCCCGCGAA 15571 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | ||| | | ||| |||||| ||||||| ||| | ||| Sbjct 15572 GATCAAACGCTGCTGGTCTGGCGGGATACCCTCTTTGTCCTGGATCTTCGCCTTCA-CGT 15630 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || || || |||| ||||||||| ||||| || ||||| || | Sbjct 15631 TGTCAATGGTGTCCGAGGACTCGACTTCCAACGTGATGGTCTTGCCGGTGAGCGTCTTGA 15690 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 15691 CGAAGATCTGCAT 15703 Score = 100 bits (110), Expect = 3e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || | || |||||||||||||| ||||| Sbjct 15968 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCATCCTCGAGCTGCTTGCCCGCGAA 16027 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCT 46491 |||| |||||||||||||| ||| | ||| Sbjct 16028 GATCAGGCGCTGCTGGTCGGGCGGGATGCT 16057 >seq1288 Length=8444 Score = 104 bits (114), Expect = 3e-17 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||| || ||||| |||| |||||||||||||||||||| Sbjct 512 CTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 453 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCT 46491 |||| |||||||||||||| ||| | ||| Sbjct 452 GATCAGGCGCTGCTGGTCGGGCGGGATGCT 423 >seq1287 Length=7882 Score = 104 bits (114), Expect = 3e-17 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||| || ||||| |||| |||||||||||||||||||| Sbjct 513 CTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 454 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCT 46491 |||| |||||||||||||| ||| | ||| Sbjct 453 GATCAGGCGCTGCTGGTCGGGCGGGATGCT 424 >seq464 Length=19301 Score = 104 bits (114), Expect = 3e-17 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| |||| |||||||||||||| ||||| Sbjct 3620 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 3679 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCT 46491 || | |||||||||||||| ||| | ||| Sbjct 3680 GATGAGGCGCTGCTGGTCGGGCGGGATGCT 3709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565175594948280