Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07-
25] 8,889 sequences; 36,136,062 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq231 170 2e-37
seq230 156 5e-33
seq1375 149 7e-31
seq1288 104 3e-17
seq1287 104 3e-17
seq464 104 3e-17
>seq231
Length=27061
Score = 170 bits (188), Expect = 2e-37
Identities = 155/193 (80%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| |||||||||||||| || |||||||| |||| |||||||||||||| || ||
Sbjct 325 CTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCAAA 266
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||||||||| ||| | || |||||||||| ||||||| ||||| |||
Sbjct 265 GATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 207
Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| ||| || || || | |||||||| ||||| |||||||| || |
Sbjct 206 TGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTCA 147
Query 46581 CAAAGATTTGCAT 46593
| |||||||||||
Sbjct 146 CGAAGATTTGCAT 134
Score = 134 bits (148), Expect = 2e-26
Identities = 145/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| || || || ||||| | || ||||||||||| ||||||||
Sbjct 891 CTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 832
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | ||| | || |||||||||| ||||||| ||||| |
Sbjct 831 GATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 772
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || || || |||| |||||| || |||||||||| || || ||
Sbjct 771 GTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGTCAATGTCTTGAC 712
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 711 GAAGATCTGCAT 700
Score = 91.5 bits (100), Expect = 2e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || || || ||| |||| |||||||||||||| |||||
Sbjct 663 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTACGCCCGTCCTCGAGCTGCTTGCCCGCGAA 604
Query 46462 TATCAAGCGCTGCTGGTCGG 46481
|| | ||||||||||||||
Sbjct 603 AATGAGGCGCTGCTGGTCGG 584
>seq230
Length=49901
Score = 156 bits (172), Expect = 5e-33
Identities = 152/193 (79%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || || || || |||| |||||||||||||| || ||
Sbjct 21856 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCAAA 21797
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||||||| | ||| | || |||||||||| ||||| ||||| |||
Sbjct 21796 GATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGT 21738
Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||||||||| || || || | |||||||| ||||| |||||||| || |
Sbjct 21737 TGTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTCA 21678
Query 46581 CAAAGATTTGCAT 46593
| |||||||||||
Sbjct 21677 CGAAGATTTGCAT 21665
Score = 152 bits (168), Expect = 6e-32
Identities = 151/193 (78%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || || ||||| |||| ||||||||||||||||||||
Sbjct 22701 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 22642
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||||||| | ||| | || |||||||||| |||||| ||||| |||
Sbjct 22641 GATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 22583
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || || || || | |||||| || |||||||||| ||| || |
Sbjct 22582 TGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTGA 22523
Query 46581 CAAAGATTTGCAT 46593
| ||||| |||||
Sbjct 22522 CGAAGATCTGCAT 22510
Score = 96.9 bits (106), Expect = 4e-15
Identities = 80/98 (82%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
|||||| |||| || |||||| ||||| |||||||| || || ||||| |||| ||
Sbjct 22209 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 22150
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481
|||||||||||| ||||| || | ||||||||||||||
Sbjct 22149 GAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGG 22112
Score = 91.5 bits (100), Expect = 2e-13
Identities = 82/103 (80%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| || || |||| || |||||| ||||| |||||||| || || || ||| ||
Sbjct 22496 CGCAGGACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTACGCCCG 22437
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481
|| |||||||||||||| ||||| || | ||||||||||||||
Sbjct 22436 TCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGG 22394
>seq1375
Length=30983
Score = 149 bits (164), Expect = 7e-31
Identities = 148/192 (77%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || |||||||| || |||||||| |||| ||||||||||| ||||||||
Sbjct 15740 CTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 15799
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||||| || | || |||||| ||| ||||||| ||||| |
Sbjct 15800 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTTCGCCTTGACATT 15859
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||||||||| || || || | |||||| || |||||||| || || || ||
Sbjct 15860 GTCGATAGTGTCGCTCGACTCGACCTCAAGCGTGATCGTCTTGCCCGTGAGGGTCTTGAC 15919
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 15920 GAAGATCTGCAT 15931
Score = 134 bits (148), Expect = 2e-26
Identities = 147/193 (76%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || ||||| || || |||||||| | || |||||||||||||| |||||
Sbjct 15512 CTCCTTCTGAATGTTGTAATCCGAAAGAGTGCGACCATCCTCGAGCTGCTTGCCCGCGAA 15571
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||||||||| | ||| | | ||| |||||| ||||||| ||| | |||
Sbjct 15572 GATCAAACGCTGCTGGTCTGGCGGGATACCCTCTTTGTCCTGGATCTTCGCCTTCA-CGT 15630
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | ||||| || || || |||| ||||||||| ||||| || ||||| || |
Sbjct 15631 TGTCAATGGTGTCCGAGGACTCGACTTCCAACGTGATGGTCTTGCCGGTGAGCGTCTTGA 15690
Query 46581 CAAAGATTTGCAT 46593
| ||||| |||||
Sbjct 15691 CGAAGATCTGCAT 15703
Score = 100 bits (110), Expect = 3e-16
Identities = 76/90 (84%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| ||||| || | || |||||||||||||| |||||
Sbjct 15968 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCATCCTCGAGCTGCTTGCCCGCGAA 16027
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCT 46491
|||| |||||||||||||| ||| | |||
Sbjct 16028 GATCAGGCGCTGCTGGTCGGGCGGGATGCT 16057
>seq1288
Length=8444
Score = 104 bits (114), Expect = 3e-17
Identities = 77/90 (86%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| ||||||||| || ||||| |||| ||||||||||||||||||||
Sbjct 512 CTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 453
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCT 46491
|||| |||||||||||||| ||| | |||
Sbjct 452 GATCAGGCGCTGCTGGTCGGGCGGGATGCT 423
>seq1287
Length=7882
Score = 104 bits (114), Expect = 3e-17
Identities = 77/90 (86%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| ||||||||| || ||||| |||| ||||||||||||||||||||
Sbjct 513 CTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 454
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCT 46491
|||| |||||||||||||| ||| | |||
Sbjct 453 GATCAGGCGCTGCTGGTCGGGCGGGATGCT 424
>seq464
Length=19301
Score = 104 bits (114), Expect = 3e-17
Identities = 77/90 (86%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| |||||||| |||| |||||||||||||| |||||
Sbjct 3620 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 3679
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCT 46491
|| | |||||||||||||| ||| | |||
Sbjct 3680 GATGAGGCGCTGCTGGTCGGGCGGGATGCT 3709
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565175594948280
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