Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq522 347 1e-90 seq523 343 1e-89 seq230 141 9e-29 seq1375 118 1e-21 seq231 111 2e-19 seq1288 104 2e-17 seq1287 104 2e-17 seq464 86.0 6e-12 >seq522 Length=1154 Score = 347 bits (384), Expect = 1e-90 Identities = 460/635 (72%), Gaps = 15/635 (2%) Strand=Plus/Minus Query 132814 TGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGC 132873 |||||||||| || || ||||||| ||| ||| || || || | || || || Sbjct 941 TGCTCGATGGTAACGGCCTCGGTGATGATGGCCCGCACAACGTCCTCGTTGGGGCGACGC 882 Query 132874 ACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATG 132933 | || |||| | | ||| |||||||| |||| ||||||||| | || ||| Sbjct 881 TTGAGGTGGCTGAAGAGGAGGCAGGCAAAGTCCGTGTGCATGCCCTCGTCGCGCGAGATG 822 Query 132934 AGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCG 132993 || |||||| ||| || | |||||||||||| ||||| || |||||||| || |||| | Sbjct 821 AGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGAG 762 Query 132994 GCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCG 133053 ||||| |||||| ||||||| |||||||||||| ||||| || || |||||||||||| Sbjct 761 GCGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAACGCAACGAGGCGCTCGCCG 702 Query 133054 AACGTGGCTTCTTTGCTGGC----GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGAC 133109 |||| | || |||| | |||||| |||||||| || ||||| || || Sbjct 701 AACGAG----CTCTGCTCGTCGTTGATCCACGTGAGCGCCCACTCAGCCTTGCGCTTCAC 646 Query 133110 GCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACG 133167 ||| || || || ||||| || | || | | | | | || | || | | | Sbjct 645 GCAGGGGATGGTCTCGATCGCATCGAAGAG--GAACTCGCGCTGCGCCGGCTCCTTAATG 588 Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || |||||||||||| ||| || | || ||||| | ||||||||| || || ||| Sbjct 587 TATGTGTCGATGAGGAGCGAGTAGGTCTCAGAGTGGATGTTCTCCATCATAATCTGGAAG 528 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 ||||| ||||| ||||| || | | |||||| || | ||| || |||| ||| || Sbjct 527 CCGTAGAAGCAGCGCGCTTCAGCGATCTGCACCTCGCCCGAGAAGCGTTCGAGCAGGTTC 468 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 ||||||||||||||||| ||| ||||| ||||| || |||||| |||||| || ||| Sbjct 467 TCGTTGACGATGCCGTCCGAGGCAGCGAAGAAGGCAAGGACGTGCGAGATGAAGTGACGC 408 Query 133348 TCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 ||||||||||||| ||| | ||||||| | |||||||||||||||||| ||||||| Sbjct 407 TCGTTGTCGTTCAGGCGGTTGCTCCAGTCGTGGATGTCCTTGGACAGGTCCATCTCCTCG 348 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| ||||| ||||| || || |||||||| Sbjct 347 GCAGTCCAGAACGAGGCCTCAGCCTTCTTGTACAT 313 >seq523 Length=1154 Score = 343 bits (380), Expect = 1e-89 Identities = 459/635 (72%), Gaps = 15/635 (2%) Strand=Plus/Minus Query 132814 TGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGC 132873 |||||||||| || || ||||||| ||| ||| || || || | || || || Sbjct 941 TGCTCGATGGTAACGGCCTCGGTGATGATGGCCCGCACAACGTCCTCGTTGGGGCGACGC 882 Query 132874 ACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATG 132933 | || |||| | | ||| |||||||| |||| ||||||||| | || ||| Sbjct 881 TTGAGGTGGCTGAAGAGGAGGCAGGCAAAGTCCGTGTGCATGCCCTCGTCGCGCGAGATG 822 Query 132934 AGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCG 132993 || |||||| ||| || | |||||||||||| ||||| || |||||||| || |||| Sbjct 821 AGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGAC 762 Query 132994 GCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCG 133053 ||||| |||||| ||||||| |||||||||||| ||||| || || |||||||||||| Sbjct 761 GCGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAACGCAACGAGGCGCTCGCCG 702 Query 133054 AACGTGGCTTCTTTGCTGGC----GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGAC 133109 |||| | || |||| | |||||| |||||||| || ||||| || || Sbjct 701 AACGAG----CTCTGCTCGTCGTTGATCCACGTGAGCGCCCACTCAGCCTTGCGCTTCAC 646 Query 133110 GCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACG 133167 ||| || || || ||||| || | || | | | | | || | || | | | Sbjct 645 GCAGGGGATGGTCTCGATCGCATCGAAGAG--GAACTCGCGCTGCGCCGGCTCCTTAATG 588 Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || |||||||||||| ||| || | || ||||| | ||||||||| || || ||| Sbjct 587 TATGTGTCGATGAGGAGCGAGTAGGTCTCAGAGTGGATGTTCTCCATCATAATCTGGAAG 528 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 ||||| ||||| ||||| || | | |||||| || | ||| || |||| ||| || Sbjct 527 CCGTAGAAGCAGCGCGCTTCAGCGATCTGCACCTCACCCGAGAAGCGTTCGAGCAGGTTC 468 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 ||||||||||||||||| ||| ||||| ||||| || |||||| |||||| || ||| Sbjct 467 TCGTTGACGATGCCGTCCGAGGCAGCGAAGAAGGCGAGGACGTGCGAGATGAAGTGACGC 408 Query 133348 TCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 ||||||||||||| ||| | ||||||| | |||||||||||||||||| ||||||| Sbjct 407 TCGTTGTCGTTCAGGCGGTTGCTCCAGTCGTGGATGTCCTTGGACAGGTCCATCTCCTCG 348 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| ||||| ||||| || || |||||||| Sbjct 347 GCAGTCCAGAACGAGGCCTCAGCCTTCTTGTACAT 313 >seq230 Length=49901 Score = 141 bits (156), Expect = 9e-29 Identities = 173/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | |||||||| || ||||| |||| |||||| || | Sbjct 22510 ATGCAGATCTTCGTCAAGACGTTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 22569 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | |||| | || | || |||| ||||| ||||| || |||||| |||| Sbjct 22570 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCAGACC 22627 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | ||| ||||| ||||| || |||| |||||||| ||||||| Sbjct 22628 AGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 22687 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||| ||||| |||| ||||| | || || ||| || | ||||||| Sbjct 22688 ACATCCAGAAGGAGTCGACTCTGCACCTTGTCCTCCGTCTGCGCGGCGGCC 22738 Score = 131 bits (144), Expect = 2e-25 Identities = 155/205 (76%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||||| || ||||| ||||||||| |||| |||||| | | | Sbjct 21665 ATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAGC 21724 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | |||| | || | || || | ||||| ||||| || |||||| |||| Sbjct 21725 GACACGATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCAT-CCCGCCAGACC 21782 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | |||||||| ||||| || |||| || ||||| ||||||| Sbjct 21783 AGCAGCGCCTTATCTTTGCGGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACA 21842 Query 38422 ACATCCAAAAGGAAGCGACGCTGCA 38446 ||||||| ||||| ||||||| || Sbjct 21843 ACATCCAGAAGGAGTCGACGCTCCA 21867 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 ||||||| ||||| ||||| | ||||||||| ||||| || |||| |||||||| | Sbjct 22112 CCGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGG 22171 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||||| ||||| |||| ||||| ||||||| || Sbjct 22172 ACTACAACATCCAGAAGGAGTCGACTCTGCACCTGGTGCTCCG 22214 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 ||||||| ||||| ||||| | ||||||||| ||||| || |||| ||| || ||| | Sbjct 22394 CCGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGTACGCTCTCAG 22453 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||||| ||||| |||| ||||| | || ||||| | | |||||| Sbjct 22454 ACTACAACATCCAGAAGGAGTCGACCCTGCACCTCGTCCTGCGCCTCCGCGGCGGC 22509 >seq1375 Length=30983 Score = 118 bits (130), Expect = 1e-21 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| ||||| |||||||| | || |||||| || | Sbjct 15703 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGTTGGAAGTCGAGTCCTCG 15644 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | |||| | || | || |||| ||||||||||| | ||||||| |||| Sbjct 15643 GACACCATTGACAACG-TGAAGGCGAAGATCCAGGACAAAGAGGGTA-TCCCGCCAGACC 15586 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||||||||| ||||| || || | ||||| || || |||| Sbjct 15585 AGCAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCGGATTACA 15526 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||| || ||||| |||| || || | || || ||| | | || |||| Sbjct 15525 ACATTCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGTGGTGGCC 15475 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || ||||| | || |||||| | | | Sbjct 15931 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTTGAGGTCGAGTCGAGC 15872 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| || || ||||| || || ||||||| Sbjct 15871 GACACTATCGACAATGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCAG 15812 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| || || ||||| || |||| ||||| || ||||||||| Sbjct 15811 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAAC 15752 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || ||||| | || || ||| | | ||||| Sbjct 15751 ATTCAGAAGGAGTCCACCCTGCACCTCGTCCTCCGTCTCCGCGGCGG 15705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/122 (77%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||| ||||| || || | ||||||||| ||||| || || | || || | Sbjct 16053 TCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACTC 15994 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 || ||||||||||||||| ||||| ||||||| || | ||||| || || | |||| Sbjct 15993 TCTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGCGGCG 15934 Query 38470 GC 38471 || Sbjct 15933 GC 15932 >seq231 Length=27061 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| || ||||| | || |||||| || | Sbjct 700 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACGATCACGCTGGAGGTCGAGTCCTCG 759 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | || | || |||| ||||| ||||| || |||||| ||||| Sbjct 760 GACACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCAGACCA 818 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || || | |||||||| || ||||| Sbjct 819 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTTTCGGATTACAA 878 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| |||| ||||| | || || ||| || | || |||| Sbjct 879 CATCCAGAAGGAGTCGACTCTGCACCTTGTCCTTCGTCTGCGCGGTGGCC 928 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 ||||||| ||||| ||||||| ||||||||| ||||| || |||| ||| || ||| | Sbjct 584 CCGACCAGCAGCGCCTCATTTTCGCGGGCAAGCAGCTCGAGGACGGGCGTACGCTCTCGG 643 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||||| ||||| | || || || | || ||||| || | |||||| Sbjct 644 ACTACAACATCCAGAAGGAGTCCACCCTACACCTCGTCCTGCGCCTGCGCGGCGGC 699 >seq1288 Length=8444 Score = 104 bits (114), Expect = 2e-17 Identities = 89/109 (82%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||| ||||| || || | ||| ||||| ||||| || |||| ||||||| Sbjct 427 TCCCGCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCC 486 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| ||||||||||||||||||||| ||||||| || | || ||||| Sbjct 487 TCAGCGACTACAACATCCAAAAGGAGTCGACGCTCCACCTCGTCCTGCG 535 >seq1287 Length=7882 Score = 104 bits (114), Expect = 2e-17 Identities = 89/109 (82%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||| ||||| || || | ||| ||||| ||||| || |||| ||||||| Sbjct 428 TCCCGCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCC 487 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| ||||||||||||||||||||| ||||||| || | || ||||| Sbjct 488 TCAGCGACTACAACATCCAAAAGGAGTCGACGCTCCACCTCGTCCTGCG 536 >seq464 Length=19301 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/109 (78%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||| ||||| ||||| | ||| ||||| ||||| || |||| ||||| | Sbjct 3705 TCCCGCCCGACCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACTC 3646 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 | ||||||||||||||| ||||| |||| || || | ||||| || Sbjct 3645 TTTCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTCGTGCTCCG 3597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500117224549760