Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07-
25] 8,889 sequences; 36,136,062 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq1911 145 1e-29
seq294 140 4e-28
seq8039 104 3e-17
seq8030 100 4e-16
seq1912 87.8 2e-12
>seq1911
Length=11305
Score = 145 bits (160), Expect = 1e-29
Identities = 246/354 (69%), Gaps = 2/354 (1%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||| | ||| || || || || || || ||||| || ||||| ||
Sbjct 4757 TCGAAGTCCTCACCACCAAGGTGGGTGTCACCGGCAGTGGCCTTGACCTCGAAGATGCCC 4698
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| || ||| | | | ||| ||||| || || || ||||| ||||| || ||||| |||
Sbjct 4697 TCCTCGATGGTGAGGAGCGAGACATCGAAGGTTCCTCCACCGAGGTCGAAGATGAGGACG 4638
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| || | | ||||| ||||||||||| ||||| || || || || || ||
Sbjct 4637 TTGCGCTCACCCACGACCTTCTTGTCGAGACCGTAGGCGATGGCGGCGGCGGTGGGCTCG 4578
Query 7637 TTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695
|| || |||| || |||| || || || | || || | || || || || || || ||
Sbjct 4577 TTGATGATACGGAGGACA-TTGAGACCCGAGATGGTACCGGCGTCCTTGGTTGCCTGACG 4519
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
||||| || || |||||||| ||||| || ||||| |||| |||| | |||||
Sbjct 4518 CTGCGAGTCATTGAAGTAGGCGGGGACGGTGACGACGGCGTTGTTGACAGTGGAGCCGAG 4459
Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
|||| || ||| | || ||||| || || | ||| || || ||||| ||
Sbjct 4458 GTACGCCTCAGCGGTCTCCTTCATCTTCAGGAGGATCATAGACGAGATCTCCTC 4405
Score = 127 bits (140), Expect = 3e-24
Identities = 136/179 (76%), Gaps = 3/179 (2%)
Strand=Plus/Minus
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
||||| || ||||| || || || || ||||| | ||||||||| || |||||||||
Sbjct 4223 CCGATGAGGCGCTTGGCGTCGAAGACGGTGTTGTAGGGGTTCATCGCGACCTGGTTCTTC 4164
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
|| || || ||||| ||||| || | | || || |||||||| ||||| || ||
Sbjct 4163 GCGGCATCGCCGATGAGACGCTCGGACT---CGGTGAAGGCGACGTAGGATGGCGTGGTG 4107
Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115
|| || || ||||||||||| || || || ||||||||||| ||||| || ||||||||
Sbjct 4106 CGGTTGCCCTGGTCGTTCGCGATGATCTCAACGCGGTCGTTCTGCCAAACACCGACGCA 4048
>seq294
Length=64402
Score = 140 bits (154), Expect = 4e-28
Identities = 268/388 (69%), Gaps = 8/388 (2%)
Strand=Plus/Plus
Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398
||| ||||| || ||||| || || | || | ||| || || ||||| |||| ||||
Sbjct 58595 CGTGCGCTTGGCACGCTCGCAAGCGGAGCGGAGACGGCGGAGCGCACGGGGGTCCTCGGA 58654
Query 7399 AATATCTTTCTTATGT-TTACGTTTAAACTCTTCAGAGAAGTG-TC--GAAGGAGTCTCG 7454
|| || ||| ||| || || | ||||| | |||||| || ||||| || | |
Sbjct 58655 GATGTCGAGCTT-TGTCTTCCGCTGGAACTCCTTCTTGAAGTGGTCAAGAAGG-GTGTTG 58712
Query 7455 AATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATAC 7514
||||| || || ||||| | ||| || || || ||||| || || || | |||| ||
Sbjct 58713 --TCGAAGTCCTCGCCACCAAGGTGGGTGTCACCAGCGGTAGCCTTCACCGCGAAGACAC 58770
Query 7515 CTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574
| || ||||| | | ||| ||||| || || |||||||| || || || ||||| |
Sbjct 58771 CGCCGGAGATGTTGAGGAGCGAGACATCGAAAGTTCCACCACCGAGATCGAAGATGAGCA 58830
Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
||||| | ||| | || | ||||||||||| ||||| || || || || || |
Sbjct 58831 CGTTCTTCTCGCCCTCAGCCTGGCGGTCGAGACCGTAGGCGATGGCGGCGGCGGTCGGCT 58890
Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694
| || || ||||| ||| || || ||||| || | |||| || || ||||| | |
Sbjct 58891 CGTTGATGATACGGAGAACGTCAAGACCAGCGATCGCACCCGCGTCCTTGGTCGCGAGAC 58950
Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGAC 7722
| || || ||||| |||||||| |||||
Sbjct 58951 GCTGGGAGTCGTTGAAGTAGGCAGGGAC 58978
>seq8039
Length=996
Score = 104 bits (114), Expect = 3e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 7594 GTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653
|||||| ||||||||||| |||| || || || || ||||| || || | ||| ||
Sbjct 379 GTTCTTGTCGAGACCGTAGGCGAGGGCGGCGGCGGTGGGTTCGTTGATGACACGGAGGAC 320
Query 7654 GTTCAGGCCAGCAATAGTTGCCG-CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712
| || || || || | |||| | || || ||||| || || || | ||||| ||||
Sbjct 319 CTCGAGACCGGCGATT-TGGCCGGCGTCCTTGGTCGCCTGACGCTGGGCGTCGTTGAAGT 261
Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772
||||||| || || | |||||||| |||| ||||| ||| || || ||| | |
Sbjct 260 AGGCCGGCACGGTGATGACCGCGTGGTTGACCTTCTTGTTGAGGAACTGCTCGGCGGTCT 201
Query 7773 CTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811
| ||||| ||||| || ||||| || |||| ||| ||||
Sbjct 200 CCTTCATCTTGGTGAGCACCATAGACGAAAGCTCCTCAG 162
>seq8030
Length=996
Score = 100 bits (110), Expect = 4e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 7594 GTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653
|||||| ||||||||||| |||| || || || || ||||| || || | ||| ||
Sbjct 618 GTTCTTGTCGAGACCGTAGGCGAGGGCGGCGGCGGTGGGTTCGTTGATGACACGGAGGAC 677
Query 7654 GTTCAGGCCAGCAATAGTTGCCG-CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712
| || || || || | |||| | || || ||||| || || || | ||||| ||||
Sbjct 678 CTCGAGACCGGCGATC-TGGCCGGCGTCCTTGGTCGCCTGACGCTGGGCGTCGTTGAAGT 736
Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772
||||||| || || | |||||||| |||| ||||| ||| || || ||| | |
Sbjct 737 AGGCCGGCACGGTGATGACCGCGTGGTTGACCTTCTTGTTGAGGAACTGCTCGGCGGTCT 796
Query 7773 CTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
| ||||| ||||| || ||||| || |||| ||| ||
Sbjct 797 CCTTCATCTTGGTGAGCACCATAGACGAAAGCTCCTC 833
>seq1912
Length=31356
Score = 87.8 bits (96), Expect = 2e-12
Identities = 177/259 (68%), Gaps = 9/259 (3%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || || ||||| | ||| || || || |||||||| || || |||| ||
Sbjct 21610 TCGAAGTCCTCGCCACCAAGGTGGGTGTCGCCGGCGGTCGCGAGAACCTCGAAGACGCCA 21551
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAA---AATGAGT 7573
| || ||| | | || ||||| || ||||||||||| ||||| | ||||| |
Sbjct 21550 TCGTCGATGGACAGGAGAGAGACATCGAAGGTACCACCACCGAGGTCGTAGACAATGA-T 21492
Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633
|| | | || || | || ||| ||||| ||||||||||| || || ||||| ||
Sbjct 21491 GCGCTGCT--CGCCGCCCTT---CTTGTCGAGGCCGTACGCGATCGCGGCGGCCGTCGGC 21437
Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693
|| || || ||||| || ||| || || ||||| | || || || ||||| ||
Sbjct 21436 TCGTTGATGATACGGAGGACGTTGAGACCGGCAATGACACCGGCGTCCTTGGTCGCCTGA 21377
Query 7694 CGTTGCGAATCGTTAAAGT 7712
|| |||| ||||| ||||
Sbjct 21376 CGCTGCGCGTCGTTGAAGT 21358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635062228806760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |