Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1911 145 1e-29 seq294 140 4e-28 seq8039 104 3e-17 seq8030 100 4e-16 seq1912 87.8 2e-12 >seq1911 Length=11305 Score = 145 bits (160), Expect = 1e-29 Identities = 246/354 (69%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| || || || || || || ||||| || ||||| || Sbjct 4757 TCGAAGTCCTCACCACCAAGGTGGGTGTCACCGGCAGTGGCCTTGACCTCGAAGATGCCC 4698 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | | ||| ||||| || || || ||||| ||||| || ||||| ||| Sbjct 4697 TCCTCGATGGTGAGGAGCGAGACATCGAAGGTTCCTCCACCGAGGTCGAAGATGAGGACG 4638 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | | ||||| ||||||||||| ||||| || || || || || || Sbjct 4637 TTGCGCTCACCCACGACCTTCTTGTCGAGACCGTAGGCGATGGCGGCGGCGGTGGGCTCG 4578 Query 7637 TTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || |||| || |||| || || || | || || | || || || || || || || Sbjct 4577 TTGATGATACGGAGGACA-TTGAGACCCGAGATGGTACCGGCGTCCTTGGTTGCCTGACG 4519 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||||| || || |||||||| ||||| || ||||| |||| |||| | ||||| Sbjct 4518 CTGCGAGTCATTGAAGTAGGCGGGGACGGTGACGACGGCGTTGTTGACAGTGGAGCCGAG 4459 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 |||| || ||| | || ||||| || || | ||| || || ||||| || Sbjct 4458 GTACGCCTCAGCGGTCTCCTTCATCTTCAGGAGGATCATAGACGAGATCTCCTC 4405 Score = 127 bits (140), Expect = 3e-24 Identities = 136/179 (76%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| || ||||| || || || || ||||| | ||||||||| || ||||||||| Sbjct 4223 CCGATGAGGCGCTTGGCGTCGAAGACGGTGTTGTAGGGGTTCATCGCGACCTGGTTCTTC 4164 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || ||||| ||||| || | | || || |||||||| ||||| || || Sbjct 4163 GCGGCATCGCCGATGAGACGCTCGGACT---CGGTGAAGGCGACGTAGGATGGCGTGGTG 4107 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || ||||||||||| || || || ||||||||||| ||||| || |||||||| Sbjct 4106 CGGTTGCCCTGGTCGTTCGCGATGATCTCAACGCGGTCGTTCTGCCAAACACCGACGCA 4048 >seq294 Length=64402 Score = 140 bits (154), Expect = 4e-28 Identities = 268/388 (69%), Gaps = 8/388 (2%) Strand=Plus/Plus Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 ||| ||||| || ||||| || || | || | ||| || || ||||| |||| |||| Sbjct 58595 CGTGCGCTTGGCACGCTCGCAAGCGGAGCGGAGACGGCGGAGCGCACGGGGGTCCTCGGA 58654 Query 7399 AATATCTTTCTTATGT-TTACGTTTAAACTCTTCAGAGAAGTG-TC--GAAGGAGTCTCG 7454 || || ||| ||| || || | ||||| | |||||| || ||||| || | | Sbjct 58655 GATGTCGAGCTT-TGTCTTCCGCTGGAACTCCTTCTTGAAGTGGTCAAGAAGG-GTGTTG 58712 Query 7455 AATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATAC 7514 ||||| || || ||||| | ||| || || || ||||| || || || | |||| || Sbjct 58713 --TCGAAGTCCTCGCCACCAAGGTGGGTGTCACCAGCGGTAGCCTTCACCGCGAAGACAC 58770 Query 7515 CTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 | || ||||| | | ||| ||||| || || |||||||| || || || ||||| | Sbjct 58771 CGCCGGAGATGTTGAGGAGCGAGACATCGAAAGTTCCACCACCGAGATCGAAGATGAGCA 58830 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 ||||| | ||| | || | ||||||||||| ||||| || || || || || | Sbjct 58831 CGTTCTTCTCGCCCTCAGCCTGGCGGTCGAGACCGTAGGCGATGGCGGCGGCGGTCGGCT 58890 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || || ||||| ||| || || ||||| || | |||| || || ||||| | | Sbjct 58891 CGTTGATGATACGGAGAACGTCAAGACCAGCGATCGCACCCGCGTCCTTGGTCGCGAGAC 58950 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 | || || ||||| |||||||| ||||| Sbjct 58951 GCTGGGAGTCGTTGAAGTAGGCAGGGAC 58978 >seq8039 Length=996 Score = 104 bits (114), Expect = 3e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 7594 GTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653 |||||| ||||||||||| |||| || || || || ||||| || || | ||| || Sbjct 379 GTTCTTGTCGAGACCGTAGGCGAGGGCGGCGGCGGTGGGTTCGTTGATGACACGGAGGAC 320 Query 7654 GTTCAGGCCAGCAATAGTTGCCG-CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 | || || || || | |||| | || || ||||| || || || | ||||| |||| Sbjct 319 CTCGAGACCGGCGATT-TGGCCGGCGTCCTTGGTCGCCTGACGCTGGGCGTCGTTGAAGT 261 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 ||||||| || || | |||||||| |||| ||||| ||| || || ||| | | Sbjct 260 AGGCCGGCACGGTGATGACCGCGTGGTTGACCTTCTTGTTGAGGAACTGCTCGGCGGTCT 201 Query 7773 CTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 | ||||| ||||| || ||||| || |||| ||| |||| Sbjct 200 CCTTCATCTTGGTGAGCACCATAGACGAAAGCTCCTCAG 162 >seq8030 Length=996 Score = 100 bits (110), Expect = 4e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 7594 GTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653 |||||| ||||||||||| |||| || || || || ||||| || || | ||| || Sbjct 618 GTTCTTGTCGAGACCGTAGGCGAGGGCGGCGGCGGTGGGTTCGTTGATGACACGGAGGAC 677 Query 7654 GTTCAGGCCAGCAATAGTTGCCG-CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 | || || || || | |||| | || || ||||| || || || | ||||| |||| Sbjct 678 CTCGAGACCGGCGATC-TGGCCGGCGTCCTTGGTCGCCTGACGCTGGGCGTCGTTGAAGT 736 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 ||||||| || || | |||||||| |||| ||||| ||| || || ||| | | Sbjct 737 AGGCCGGCACGGTGATGACCGCGTGGTTGACCTTCTTGTTGAGGAACTGCTCGGCGGTCT 796 Query 7773 CTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 | ||||| ||||| || ||||| || |||| ||| || Sbjct 797 CCTTCATCTTGGTGAGCACCATAGACGAAAGCTCCTC 833 >seq1912 Length=31356 Score = 87.8 bits (96), Expect = 2e-12 Identities = 177/259 (68%), Gaps = 9/259 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || ||||| | ||| || || || |||||||| || || |||| || Sbjct 21610 TCGAAGTCCTCGCCACCAAGGTGGGTGTCGCCGGCGGTCGCGAGAACCTCGAAGACGCCA 21551 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAA---AATGAGT 7573 | || ||| | | || ||||| || ||||||||||| ||||| | ||||| | Sbjct 21550 TCGTCGATGGACAGGAGAGAGACATCGAAGGTACCACCACCGAGGTCGTAGACAATGA-T 21492 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 || | | || || | || ||| ||||| ||||||||||| || || ||||| || Sbjct 21491 GCGCTGCT--CGCCGCCCTT---CTTGTCGAGGCCGTACGCGATCGCGGCGGCCGTCGGC 21437 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || ||||| || ||| || || ||||| | || || || ||||| || Sbjct 21436 TCGTTGATGATACGGAGGACGTTGAGACCGGCAATGACACCGGCGTCCTTGGTCGCCTGA 21377 Query 7694 CGTTGCGAATCGTTAAAGT 7712 || |||| ||||| |||| Sbjct 21376 CGCTGCGCGTCGTTGAAGT 21358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635062228806760