Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq473 114 2e-20 seq523 107 2e-18 seq522 107 2e-18 >seq473 Length=15333 Score = 114 bits (126), Expect = 2e-20 Identities = 218/311 (70%), Gaps = 10/311 (3%) Strand=Plus/Plus Query 176764 ATCCGTCATGATCATGAGACGACCATACCG-AAGCTCGGAAACATCTTGA-TAGTCCTTA 176821 ||||||||||||||||||||||||||| || ||||| ||| | | || || ||||| Sbjct 3031 ATCCGTCATGATCATGAGACGACCATAGCGCAAGCT-GGAGGTGT-TCGAGTACTCCTTG 3088 Query 176822 CCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGT 176881 || ||||||| ||||||||||| | | || ||||| ||| ||| ||| Sbjct 3089 TTGTGCACGAGACCCATGATCTTCTTGATGTTCTGGATCTCTTCGTTCTTCATGATCTG- 3147 Query 176882 GTGACAGA-GGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTG 176940 || | ||| || ||||| || ||| ||||| || ||||| || ||| ||| Sbjct 3148 GTCATGCTTGGCCTCGCGAACGTTGAGGAGCTTGCCACGCAGTGGGAACACGCCGAAGTT 3207 Query 176941 ATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGT 177000 |||||||| || || ||| || |||| ||| ||||| || || ||||||||||| || Sbjct 3208 GTCGCGACCGACGACGCCGAGTCCGGCAATCGCAAGCGTCTTGGCCGAATCACCCTCGGT 3267 Query 177001 CACGATGAGTGTACA--CTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAAT 177058 | |||||| || || ||| | | | ||| | || || |||||||| || || | Sbjct 3268 TAGGATGAGCGTGCAGTCTTTCGCGTTCTTGC--TCCCTGCGTTGTTCGCGTCCGACAGT 3325 Query 177059 TTGGGAATACC 177069 ||||||| ||| Sbjct 3326 TTGGGAAGACC 3336 >seq523 Length=1154 Score = 107 bits (118), Expect = 2e-18 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-C 102238 ||||| ||| | || || || || ||||| ||||||||||| || || ||| ||| | Sbjct 706 GAGCGCCTCGTTGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTC-GCGTC 764 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 || | |||||||||||||| || |||||||| || ||| ||||||||||||||| || Sbjct 765 CATCTTCTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCACCTTCTCCAACGAGCTCAT 824 Query 102299 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| || |||||||| | ||| || ||||| Sbjct 825 CTCGCGCGACGAGGGCATGCACACGGACTTTGC 857 >seq522 Length=1154 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| ||| | || || || || ||||| ||||||||||| || || ||| | | Sbjct 706 GAGCGCCTCGTTGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCCTCC 765 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | |||||||||||||| || |||||||| || ||| ||||||||||||||| ||| Sbjct 766 ATCTTCTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATC 825 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || || |||||||| | ||| || ||||| Sbjct 826 TCGCGCGACGAGGGCATGCACACGGACTTTGC 857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620673427760080