Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07-
25] 8,889 sequences; 36,136,062 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq523 105 8e-18
seq522 105 8e-18
seq1474 82.4 9e-11
seq160 82.4 9e-11
>seq523
Length=1154
Score = 105 bits (116), Expect = 8e-18
Identities = 331/503 (66%), Gaps = 10/503 (2%)
Strand=Plus/Minus
Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573
|| || || || ||||||||||| || |||| || || ||||||||||| | |||
Sbjct 839 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCCGCGCTTC 780
Query 119574 TTTAGCCAAAAGATGGCACAAAAAC-TTCCAGAAAAGAAGATGCCCTCCACACAGGCGAA 119632
|| ||||| ||||||| || ||| || || |||||||||||||| || ||||||
Sbjct 779 TTGAGCCAGAAGATGG-ACGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAA 721
Query 119633 AGCGAATAGACGCTCAGCAAA--AGGTC-GAGACTTGTCGAACCACTTGAGAGCCCAGTT 119689
|| | || ||||| | || || || | | || || |||| |||| ||||| |
Sbjct 720 CGCAACGAGGCGCTCGCCGAACGAGCTCTGCTCGTCGTTGATCCACGTGAGCGCCCACTC 661
Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAGC 119749
||||| |||| | |||||||| || | ||| || ||||| || || | ||
Sbjct 660 AGCCTTGCGCTTCACGCAGGGGATGGTCTCGATCGCATCGAAGAGGAACTCGCGCTGCGC 601
Query 119750 ACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCATT 119809
|||||||| ||| | || ||||| |||||||||||| || | | || |
Sbjct 600 CGGCTCCTTAATGTATGTGTCGATGAGGAGCGAGTAGGTCTCAGAGTGGATGTTCTCCAT 541
Query 119810 GTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAATT 119869
||| || | || || |||| ||||| | || ||||| || | | | ||
Sbjct 540 CATAATCTGGAAGCCGTAGAAGCAGCGCGCTTCAGCGATCTGCACCTCACCCG-AGAAGC 482
Query 119870 GTT-GTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACT 119928
||| | | || || || || || || || |||||||||| || | || || |
Sbjct 481 GTTCGAGCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGCGAAGAAGGCGAGGACGTGCG 422
Query 119929 TTATGAATTTCTGTTCATTATCGTTGAG--TGTT-TTCCAGTCGTCCATATCTTTAGACA 119985
||||| | | || || ||||| || ||| ||||||||| || || || ||||
Sbjct 421 AGATGAAGTGACGCTCGTTGTCGTTCAGGCGGTTGCTCCAGTCGTGGATGTCCTTGGACA 362
Query 119986 AGTCCACCTCTTCAGCTGTCCAG 120008
||||| ||| || || ||||||
Sbjct 361 GGTCCATCTCCTCGGCAGTCCAG 339
>seq522
Length=1154
Score = 105 bits (116), Expect = 8e-18
Identities = 329/502 (66%), Gaps = 8/502 (2%)
Strand=Plus/Minus
Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573
|| || || || ||||||||||| || |||| || || ||||||||||| | |||
Sbjct 839 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCCGCGCTTC 780
Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633
|| ||||| ||||||| || || || |||||||||||||| || ||||||
Sbjct 779 TTGAGCCAGAAGATGGAGGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAAC 720
Query 119634 GCGAATAGACGCTCAGCAAA--AGGTC-GAGACTTGTCGAACCACTTGAGAGCCCAGTTG 119690
|| | || ||||| | || || || | | || || |||| |||| ||||| |
Sbjct 719 GCAACGAGGCGCTCGCCGAACGAGCTCTGCTCGTCGTTGATCCACGTGAGCGCCCACTCA 660
Query 119691 GCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAGCA 119750
||||| |||| | |||||||| || | ||| || ||||| || || | ||
Sbjct 659 GCCTTGCGCTTCACGCAGGGGATGGTCTCGATCGCATCGAAGAGGAACTCGCGCTGCGCC 600
Query 119751 CCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCATTG 119810
|||||||| ||| | || ||||| |||||||||||| || | | || |
Sbjct 599 GGCTCCTTAATGTATGTGTCGATGAGGAGCGAGTAGGTCTCAGAGTGGATGTTCTCCATC 540
Query 119811 TGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAATTG 119870
||| || | || || |||| ||||| | || ||||| ||| | | | || |
Sbjct 539 ATAATCTGGAAGCCGTAGAAGCAGCGCGCTTCAGCGATCTGCACCTCGCCCG-AGAAGCG 481
Query 119871 TT-GTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACTT 119929
|| | | || || || || || || || |||||||||| || | || || |
Sbjct 480 TTCGAGCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGCGAAGAAGGCAAGGACGTGCGA 421
Query 119930 TATGAATTTCTGTTCATTATCGTTGAG--TGTT-TTCCAGTCGTCCATATCTTTAGACAA 119986
||||| | | || || ||||| || ||| ||||||||| || || || ||||
Sbjct 420 GATGAAGTGACGCTCGTTGTCGTTCAGGCGGTTGCTCCAGTCGTGGATGTCCTTGGACAG 361
Query 119987 GTCCACCTCTTCAGCTGTCCAG 120008
||||| ||| || || ||||||
Sbjct 360 GTCCATCTCCTCGGCAGTCCAG 339
>seq1474
Length=6090
Score = 82.4 bits (90), Expect = 9e-11
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774
||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||
Sbjct 2184 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTCGGTTCGACCCCGGCG 2243
Query 136775 TTGG 136778
||||
Sbjct 2244 TTGG 2247
>seq160
Length=30680
Score = 82.4 bits (90), Expect = 9e-11
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774
||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||
Sbjct 2490 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTCGGTTCGACCCCGGCG 2431
Query 136775 TTGG 136778
||||
Sbjct 2430 TTGG 2427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588910557404200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |