Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq523 105 8e-18 seq522 105 8e-18 seq1474 82.4 9e-11 seq160 82.4 9e-11 >seq523 Length=1154 Score = 105 bits (116), Expect = 8e-18 Identities = 331/503 (66%), Gaps = 10/503 (2%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || || || || ||||||||||| || |||| || || ||||||||||| | ||| Sbjct 839 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCCGCGCTTC 780 Query 119574 TTTAGCCAAAAGATGGCACAAAAAC-TTCCAGAAAAGAAGATGCCCTCCACACAGGCGAA 119632 || ||||| ||||||| || ||| || || |||||||||||||| || |||||| Sbjct 779 TTGAGCCAGAAGATGG-ACGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAA 721 Query 119633 AGCGAATAGACGCTCAGCAAA--AGGTC-GAGACTTGTCGAACCACTTGAGAGCCCAGTT 119689 || | || ||||| | || || || | | || || |||| |||| ||||| | Sbjct 720 CGCAACGAGGCGCTCGCCGAACGAGCTCTGCTCGTCGTTGATCCACGTGAGCGCCCACTC 661 Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAGC 119749 ||||| |||| | |||||||| || | ||| || ||||| || || | || Sbjct 660 AGCCTTGCGCTTCACGCAGGGGATGGTCTCGATCGCATCGAAGAGGAACTCGCGCTGCGC 601 Query 119750 ACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCATT 119809 |||||||| ||| | || ||||| |||||||||||| || | | || | Sbjct 600 CGGCTCCTTAATGTATGTGTCGATGAGGAGCGAGTAGGTCTCAGAGTGGATGTTCTCCAT 541 Query 119810 GTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAATT 119869 ||| || | || || |||| ||||| | || ||||| || | | | || Sbjct 540 CATAATCTGGAAGCCGTAGAAGCAGCGCGCTTCAGCGATCTGCACCTCACCCG-AGAAGC 482 Query 119870 GTT-GTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACT 119928 ||| | | || || || || || || || |||||||||| || | || || | Sbjct 481 GTTCGAGCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGCGAAGAAGGCGAGGACGTGCG 422 Query 119929 TTATGAATTTCTGTTCATTATCGTTGAG--TGTT-TTCCAGTCGTCCATATCTTTAGACA 119985 ||||| | | || || ||||| || ||| ||||||||| || || || |||| Sbjct 421 AGATGAAGTGACGCTCGTTGTCGTTCAGGCGGTTGCTCCAGTCGTGGATGTCCTTGGACA 362 Query 119986 AGTCCACCTCTTCAGCTGTCCAG 120008 ||||| ||| || || |||||| Sbjct 361 GGTCCATCTCCTCGGCAGTCCAG 339 >seq522 Length=1154 Score = 105 bits (116), Expect = 8e-18 Identities = 329/502 (66%), Gaps = 8/502 (2%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || || || || ||||||||||| || |||| || || ||||||||||| | ||| Sbjct 839 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCCGCGCTTC 780 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| || || || |||||||||||||| || |||||| Sbjct 779 TTGAGCCAGAAGATGGAGGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAAC 720 Query 119634 GCGAATAGACGCTCAGCAAA--AGGTC-GAGACTTGTCGAACCACTTGAGAGCCCAGTTG 119690 || | || ||||| | || || || | | || || |||| |||| ||||| | Sbjct 719 GCAACGAGGCGCTCGCCGAACGAGCTCTGCTCGTCGTTGATCCACGTGAGCGCCCACTCA 660 Query 119691 GCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAGCA 119750 ||||| |||| | |||||||| || | ||| || ||||| || || | || Sbjct 659 GCCTTGCGCTTCACGCAGGGGATGGTCTCGATCGCATCGAAGAGGAACTCGCGCTGCGCC 600 Query 119751 CCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCATTG 119810 |||||||| ||| | || ||||| |||||||||||| || | | || | Sbjct 599 GGCTCCTTAATGTATGTGTCGATGAGGAGCGAGTAGGTCTCAGAGTGGATGTTCTCCATC 540 Query 119811 TGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAATTG 119870 ||| || | || || |||| ||||| | || ||||| ||| | | | || | Sbjct 539 ATAATCTGGAAGCCGTAGAAGCAGCGCGCTTCAGCGATCTGCACCTCGCCCG-AGAAGCG 481 Query 119871 TT-GTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACTT 119929 || | | || || || || || || || |||||||||| || | || || | Sbjct 480 TTCGAGCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGCGAAGAAGGCAAGGACGTGCGA 421 Query 119930 TATGAATTTCTGTTCATTATCGTTGAG--TGTT-TTCCAGTCGTCCATATCTTTAGACAA 119986 ||||| | | || || ||||| || ||| ||||||||| || || || |||| Sbjct 420 GATGAAGTGACGCTCGTTGTCGTTCAGGCGGTTGCTCCAGTCGTGGATGTCCTTGGACAG 361 Query 119987 GTCCACCTCTTCAGCTGTCCAG 120008 ||||| ||| || || |||||| Sbjct 360 GTCCATCTCCTCGGCAGTCCAG 339 >seq1474 Length=6090 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| || Sbjct 2184 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTCGGTTCGACCCCGGCG 2243 Query 136775 TTGG 136778 |||| Sbjct 2244 TTGG 2247 >seq160 Length=30680 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| || Sbjct 2490 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTCGGTTCGACCCCGGCG 2431 Query 136775 TTGG 136778 |||| Sbjct 2430 TTGG 2427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588910557404200