Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07-
25] 8,889 sequences; 36,136,062 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq230 120 2e-22
seq231 105 4e-18
seq1375 98.7 6e-16
>seq230
Length=49901
Score = 120 bits (132), Expect = 2e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| |||||||||||| | || | || || ||||| || || |||||
Sbjct 21855 TCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCAAAG 21796
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||||||| |||| | ||||||||||| |||||| ||||||
Sbjct 21795 ATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 21736
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || | | ||| || |||| ||| ||||| || || || || ||||||||
Sbjct 21735 TCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTCACG 21676
Query 34971 AAGATCTGCAT 34981
||||| |||||
Sbjct 21675 AAGATTTGCAT 21665
Score = 105 bits (116), Expect = 4e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| |||||||||||| | || | || || ||||| || ||||| ||
Sbjct 22700 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 22641
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||||||| |||| | ||||||||||| ||||| ||||||
Sbjct 22640 ATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 22581
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || || ||| || |||| || || || || ||||| | ||||| ||
Sbjct 22580 TCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTGACG 22521
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 22520 AAGATCTGCAT 22510
>seq231
Length=27061
Score = 105 bits (116), Expect = 4e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| || ||||||||| | || |||| || ||||| |||||||| ||
Sbjct 890 TCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAG 831
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||||||| |||| | ||||||||||| |||||| |||||
Sbjct 830 ATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTG 771
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || || ||| || || | || || || || ||||| | ||||| ||
Sbjct 770 TCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGTCAATGTCTTGACG 711
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 710 AAGATCTGCAT 700
Score = 96.9 bits (106), Expect = 2e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| || || ||||||||||| | || | || || ||||| || || |||||
Sbjct 324 TCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCAAAG 265
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| |||| | ||||||||||| |||||| ||||||
Sbjct 264 ATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTG 205
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | ||| || |||| ||| ||||| || || || || ||||||||
Sbjct 204 TCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTCACG 145
Query 34971 AAGATCTGCAT 34981
||||| |||||
Sbjct 144 AAGATTTGCAT 134
>seq1375
Length=30983
Score = 98.7 bits (108), Expect = 6e-16
Identities = 140/195 (72%), Gaps = 8/195 (4%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| ||||||||||| | || | || || ||||| |||||||| ||
Sbjct 15741 TCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 15800
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| | || | |||||||| || |||||| ||||| ||
Sbjct 15801 ATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTTCGCCTTGAC--AT 15858
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| || | | ||| || || | || || || || |||||||| |||||
Sbjct 15859 --TGTCGATAGTGTCGCTCGACTCGACCTCAAGCGTGATCGTCTTGCCCGTGAGGGTCTT 15916
Query 34967 CACAAAGATCTGCAT 34981
|| |||||||||||
Sbjct 15917 GACGAAGATCTGCAT 15931
Score = 95.1 bits (104), Expect = 8e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| || |||||||| | || |||| || ||||| || || || ||
Sbjct 15513 TCCTTCTGAATGTTGTAATCCGAAAGAGTGCGACCATCCTCGAGCTGCTTGCCCGCGAAG 15572
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || ||||||||| |||| | ||||| ||||| |||||| || |||
Sbjct 15573 ATCAAACGCTGCTGGTCTGGCGGGATACCCTCTTTGTCCTGGATCTTCGCCTTCACGTTG 15632
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || || ||| || || | || ||||| || || ||||| ||||| ||
Sbjct 15633 TCAATGGTGTCCGAGGACTCGACTTCCAACGTGATGGTCTTGCCGGTGAGCGTCTTGACG 15692
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 15693 AAGATCTGCATA 15704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324598430920392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |