Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq523 266 6e-66 seq522 266 6e-66 seq4264 131 3e-25 >seq523 Length=1154 Score = 266 bits (294), Expect = 6e-66 Identities = 403/569 (71%), Gaps = 11/569 (2%) Strand=Plus/Minus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | ||||||||||||| |||||| ||| ||||| || ||||||| ||||||||| Sbjct 868 AGAGGAGGCAGGCAAAGTCCGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGA 809 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || ||| || ||||||| || | || ||||||||||| || | |||||| ||||| | Sbjct 808 AGGTGAGGCCGGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAGCCCG 749 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||||||||| || || |||||||| ||| | ||| ||||| || | || Sbjct 748 AGAAGAAGATGCCCTCGACGGCGGCGAACGCAACGAGGCGCTCGCCGAACGAGCTCTGCT 689 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 ||| |||||| | |||||||| || ||||| ||| | ||| || || ||||| | Sbjct 688 CGTCGTTGATCCACGTGAGCGCCCACTCAGCCTTGCGCTTCACGCAGGGGATGGTCTCGA 629 Query 48363 TGGCCCGGAAGAGCTTCTTGCACT-CACCTGCGTCCGCAACATAGGT---AGTGAGCAGC 48418 | || |||||| || || || | || || ||| || || || |||| ||| Sbjct 628 TCGCATCGAAGAGGAACTCGCGCTGCGCCGGC-TCCTTAATGTATGTGTCGATGAGGAGC 570 Query 48419 TTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTG 48478 | ||| |||||||||| | ||||| || |||||||| ||||||||| | Sbjct 569 ---GAGTAGGTCTCAGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCAGCGC 513 Query 48479 GCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCA 48538 || ||| | |||||| || ||||| | || ||||| ||||| ||||| || || Sbjct 512 GCTTCAGCGATCTGCACCTCACCCGAGAAGCGTTCGAGCAGGTTCTCGTTGACGATGCCG 453 Query 48539 TCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA 48598 || || ||||| |||||||| ||||| || | ||| || |||||||||| | | || Sbjct 452 TCCGAGGCAGCGAAGAAGGCGAGGACGTGCGAGATGAAGTGACGCTCGTTGTCGTTCAGG 393 Query 48599 GCAT---TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGAC 48655 | ||||| | || | ||| ||| |||||||| || || |||||||||| || Sbjct 392 CGGTTGCTCCAGTCGTGGATGTCCTTGGACAGGTCCATCTCCTCGGCAGTCCAGAACGAG 333 Query 48656 GCGAGTGCTTTTTTGTACATGCCCCATAT 48684 || || || |||||||| |||||| Sbjct 332 GCCTCAGCCTTCTTGTACATCTGCCATAT 304 >seq522 Length=1154 Score = 266 bits (294), Expect = 6e-66 Identities = 403/569 (71%), Gaps = 11/569 (2%) Strand=Plus/Minus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | ||||||||||||| |||||| ||| ||||| || ||||||| ||||||||| Sbjct 868 AGAGGAGGCAGGCAAAGTCCGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGA 809 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || ||| || ||||||| || | || ||||||||||| || | ||||| ||||| | Sbjct 808 AGGTGAGGCCGGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCCG 749 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||||||||| || || |||||||| ||| | ||| ||||| || | || Sbjct 748 AGAAGAAGATGCCCTCGACGGCGGCGAACGCAACGAGGCGCTCGCCGAACGAGCTCTGCT 689 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 ||| |||||| | |||||||| || ||||| ||| | ||| || || ||||| | Sbjct 688 CGTCGTTGATCCACGTGAGCGCCCACTCAGCCTTGCGCTTCACGCAGGGGATGGTCTCGA 629 Query 48363 TGGCCCGGAAGAGCTTCTTGCACT-CACCTGCGTCCGCAACATAGGT---AGTGAGCAGC 48418 | || |||||| || || || | || || ||| || || || |||| ||| Sbjct 628 TCGCATCGAAGAGGAACTCGCGCTGCGCCGGC-TCCTTAATGTATGTGTCGATGAGGAGC 570 Query 48419 TTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTG 48478 | ||| |||||||||| | ||||| || |||||||| ||||||||| | Sbjct 569 ---GAGTAGGTCTCAGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCAGCGC 513 Query 48479 GCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCA 48538 || ||| | |||||| || ||||| | || ||||| ||||| ||||| || || Sbjct 512 GCTTCAGCGATCTGCACCTCGCCCGAGAAGCGTTCGAGCAGGTTCTCGTTGACGATGCCG 453 Query 48539 TCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA 48598 || || ||||| |||||||||||||| || | ||| || |||||||||| | | || Sbjct 452 TCCGAGGCAGCGAAGAAGGCAAGGACGTGCGAGATGAAGTGACGCTCGTTGTCGTTCAGG 393 Query 48599 GCAT---TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGAC 48655 | ||||| | || | ||| ||| |||||||| || || |||||||||| || Sbjct 392 CGGTTGCTCCAGTCGTGGATGTCCTTGGACAGGTCCATCTCCTCGGCAGTCCAGAACGAG 333 Query 48656 GCGAGTGCTTTTTTGTACATGCCCCATAT 48684 || || || |||||||| |||||| Sbjct 332 GCCTCAGCCTTCTTGTACATCTGCCATAT 304 >seq4264 Length=4713 Score = 131 bits (144), Expect = 3e-25 Identities = 278/410 (68%), Gaps = 9/410 (2%) Strand=Plus/Plus Query 213825 AACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCA 213884 || |||||||| | ||||||||| ||| ||||| | || | || ||| || Sbjct 2840 AAGAGGTCCGGTATCCACAGCGCATAGAAGAGGTCGCGGGCACGGGATTCTTCCTTGCCG 2899 Query 213885 GAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATG 213944 ||| || || || || || |||||||| | ||| |||||||||||||| | ||||||| Sbjct 2900 TGGTTCTTACGGAGGTCAAGGAAGTCAAAAACGTCGGCGTGCCACGGCTCAAGGTAGATG 2959 Query 213945 GCAAAGGCGCCCGGCC---TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAG 214001 || ||||| || || | | |||||||||||||| || | |||| | || |||| Sbjct 2960 GCGAAGGCACCGGGTCGTTTGTTGCCGCCCTGGTCAACGTAGCGGGCCGTCGCGTCGAAG 3019 Query 214002 ATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCG 214061 ||| || | ||| || | ||||| ||| ||||| || || || || ||||| ||| Sbjct 3020 GCGCGAAGCATGGGCACGATACCGTTCGACATGCCGTTCGTACCGGCAATGTACGACCCG 3079 Query 214062 GAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCG 214121 | || | | |||| ||| ||| || ||||| || || ||| |||||||| || Sbjct 3080 GTCGCACGAATGTTGTGGATGTTGAGGCCGATGCCGCCCGCCGTCTTCGAGATCATCGCA 3139 Query 214122 CAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAG--CAAGA 214179 ||| | | | ||||| |||||| | || ||| || | | | ||| || || Sbjct 3140 CAGTTCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCA--TACAGACCAGGA 3197 Query 214180 AGCAGCTCGAGAGCTGGGGCCTGGAC-GAGCCAGAGTTGAAAAGCGTGGG 214228 ||||| || ||||| || || || | ||| | |||||| ||||| || Sbjct 3198 AGCAGGACGCGAGCT-GGTTGTGCACTGTGCCGGCGTTGAAGAGCGTCGG 3246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931429295061760