Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq523 250 5e-61 seq522 246 6e-60 seq4264 154 3e-32 >seq523 Length=1154 Score = 250 bits (276), Expect = 5e-61 Identities = 406/575 (71%), Gaps = 17/575 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| ||||||||||||||||| | ||| |||||| ||||| ||||| || ||| Sbjct 304 ATATGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACTGCCGAGGAGATGGACCTG 363 Query 25537 GCCAAGGACATGGACGGCTGGT---ACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 |||||||||| ||| |||| || || | | |||||| || || || | Sbjct 364 TCCAAGGACATCCACGACTGGAGCAACCGCCTGAACGACAACGAGCGTCACTTCATCTCG 423 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || |||||||| ||| ||| | Sbjct 424 CACGTCCTCGCCTTCTTCGCTGCCTCGGACGGCATCGTCAACGAGAACCTGCTCGAACGC 483 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| | | || |||||| || || || || |||||||| |||||||| || Sbjct 484 TTCTCGGGTGAGGTGCAGATCGCTGAAGCGCGCTGCTTCTACGGCTTCCAGATTATGATG 543 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA--CG 25768 || || | ||||||||| || | ||| || || || ||||||| || || Sbjct 544 GAGAACATCCACTCTGAGACCTACTC---GCTCCTCATCGACACATACATTAAGGAGCCG 600 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 ||| | | ||| || || || | ||| |||||| ||| ||| || | ||| | |||| Sbjct 601 GCGCAGCGCGAGTTC--CTCTTCGATGCGATCGAGACCATCCCCTGCGTGAAGCGCAAGG 658 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTA 25887 | |||||| | | |||||||||| | || || ||| |||| |||||||| || || Sbjct 659 CTGAGTGGGCGCTCACGTGGATCAACGACGAGCAGAGCT-CGTTCGGCGAGCGCCTCGTT 717 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 || || || || || ||||||||||| ||| || ||||| ||| |||||||||||||| Sbjct 718 GCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCGTCCATCTTCTGGCTC 777 Query 25948 AAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 ||| || | |||| ||||||||| || ||| ||||||||||||||| | ||||| Sbjct 778 AAGAAG-CGCGGACTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGA 836 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||| | |||| || ||||||||||| |||| || Sbjct 837 GGGCATGCACACGGACTTTGCCTGCCTCCTCTTCA 871 >seq522 Length=1154 Score = 246 bits (272), Expect = 6e-60 Identities = 405/575 (70%), Gaps = 17/575 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| ||||||||||||||||| | ||| |||||| ||||| ||||| || ||| Sbjct 304 ATATGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACTGCCGAGGAGATGGACCTG 363 Query 25537 GCCAAGGACATGGACGGCTGGT---ACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 |||||||||| ||| |||| || || | | |||||| || || || | Sbjct 364 TCCAAGGACATCCACGACTGGAGCAACCGCCTGAACGACAACGAGCGTCACTTCATCTCG 423 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || |||||||| ||| ||| | Sbjct 424 CACGTCCTTGCCTTCTTCGCTGCCTCGGACGGCATCGTCAACGAGAACCTGCTCGAACGC 483 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| | | || |||||| || || || || |||||||| |||||||| || Sbjct 484 TTCTCGGGCGAGGTGCAGATCGCTGAAGCGCGCTGCTTCTACGGCTTCCAGATTATGATG 543 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA--CG 25768 || || | ||||||||| || | ||| || || || ||||||| || || Sbjct 544 GAGAACATCCACTCTGAGACCTACTC---GCTCCTCATCGACACATACATTAAGGAGCCG 600 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 ||| | | ||| || || || | ||| |||||| ||| ||| || | ||| | |||| Sbjct 601 GCGCAGCGCGAGTTC--CTCTTCGATGCGATCGAGACCATCCCCTGCGTGAAGCGCAAGG 658 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTA 25887 | |||||| | | |||||||||| | || || ||| |||| |||||||| || || Sbjct 659 CTGAGTGGGCGCTCACGTGGATCAACGACGAGCAGAGCT-CGTTCGGCGAGCGCCTCGTT 717 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 || || || || || ||||||||||| ||| || ||||| || |||||||||||||| Sbjct 718 GCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCCTCCATCTTCTGGCTC 777 Query 25948 AAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 ||| || | |||| ||||||||| || ||| ||||||||||||||| | ||||| Sbjct 778 AAGAAG-CGCGGACTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGA 836 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||| | |||| || ||||||||||| |||| || Sbjct 837 GGGCATGCACACGGACTTTGCCTGCCTCCTCTTCA 871 >seq4264 Length=4713 Score = 154 bits (170), Expect = 3e-32 Identities = 422/634 (67%), Gaps = 22/634 (3%) Strand=Plus/Plus Query 222044 AAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCG 222103 ||||||||||| ||||||||||| | ||||| || | || || || ||| |||| Sbjct 2840 AAGAGGTCCGGTATCCACAGCGCATAGAAGAGGTCGCGGGCACGGGATTCTTCCTTGCCG 2899 Query 222104 TTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACG 222163 | ||| || | || || | || ||||||| ||| |||||||||||||| || |||| | Sbjct 2900 TGGTTCTTACGGAGGTCAAGGAAGTCAAAAACGTCGGCGTGCCACGGCTCAAGGTAGATG 2959 Query 222164 GCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAG 222223 || | || |||||||| |||||||| ||||| || || | || |||| |||| Sbjct 2960 GCGAAGGCACCGGGTCGTTTGTTGCCGCCCTGGTCAACGTAGCGGGCCGTCGCGTCGAAG 3019 Query 222224 ATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCG 222283 |||||| | || || | ||||| || ||||| || || |||||||| ||| Sbjct 3020 GCGCGAAGCATGGGCACGATACCGTTCGACATGCCGTTCGTACCGGCAATGTACGACCCG 3079 Query 222284 CCGGCCCTCAGGTTACTGGCAG-ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGC 222342 || | | ||| ||| | | |||||| || || || ||||||||||| || Sbjct 3080 GTCGCACGAATGTT-GTGGATGTTGAGGCCGATGCCGCCCGCCGTCTTCGAGATCATCGC 3138 Query 222343 GCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAG--CAGA 222400 ||| ||||||| || || ||||||||| || ||||| ||||| | | ||| ||| Sbjct 3139 ACAGTTCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTT--CATACAGACCAGG 3196 Query 222401 AAACAAGACGACATCTGAGATTTG----GTGGAACAGGCGTTAAACAGCGTGGGACTGGC 222456 || || |||| | ||| | | || ||| | |||||| || ||||| || ||| Sbjct 3197 AAGCAGGACGCGAGCTG-GTTGTGCACTGTG---CCGGCGTTGAAGAGCGTCGGCGAGGC 3252 Query 222457 GTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTA-CG-ACTCTGGCGATGTTG 222514 ||| || |||| || | ||||| | |||||||| | || || || | |||| Sbjct 3253 GTGCGTGAAGTGGCGGTTCGACATGTAGTGATACGTCTCAATCGCACGCT--CAATGTCC 3310 Query 222515 TCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGACC- 222573 || ||||| || | |||| | |||| || || || || | ||| ||| ||| Sbjct 3311 TCGCCGTGGATGCCGACGGCGACCCGCATGAGCAGGTGTTGCGGTCGCTCAACA--ACCT 3368 Query 222574 -CTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGT 222632 ||| | | ||| ||||| || || || |||||||| || ||| ||||| | Sbjct 3369 TGTTGTTGATCTTGAGGAGGTATGACCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTACT 3428 Query 222633 CAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAG 222666 ||||| | | ||| | | ||| | |||||| Sbjct 3429 GGAAGTCCCGGTCGTAGATGATGGCAGAGTCCAG 3462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928741593732160