Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq523 102 1e-16 seq522 102 1e-16 seq473 91.5 2e-13 >seq523 Length=1154 Score = 102 bits (112), Expect = 1e-16 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 |||| |||| ||||||||| ||||||| || || ||||| ||||||||||| || | Sbjct 695 GCTCGTTCGGCGAGCGCCTCGTTGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCT 754 Query 65126 CATTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCA 65184 | ||| ||| | || | ||| | |||||||| || |||||||| ||||| |||||| Sbjct 755 CGTTC-GCGTCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCACCTTCTCC 813 Query 65185 AATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || || || || || || ||||| | ||| ||| |||||| Sbjct 814 AACGAGCTCATCTCGCGCGACGAGGGCATGCACACGGACTTTGCC 858 >seq522 Length=1154 Score = 102 bits (112), Expect = 1e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 |||| |||| ||||||||| ||||||| || || ||||| ||||||||||| || | Sbjct 695 GCTCGTTCGGCGAGCGCCTCGTTGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCT 754 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | ||| | | || | ||| | |||||||| || |||||||| ||||| |||||| | Sbjct 755 CGTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCACCTTCTCCA 814 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 | || || || || || || ||||| | ||| ||| |||||| Sbjct 815 ACGAGCTCATCTCGCGCGACGAGGGCATGCACACGGACTTTGCC 858 >seq473 Length=15333 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 13552 CGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAG--TGT 13609 |||| ||||||| || ||||||||||| || || | ||| | | ||||| || Sbjct 3337 CGGTCTTCCCAAACTGTCGGACGCGAACAACGCAGGGA--GCAAGAACGCGAAAGACTGC 3280 Query 13610 ACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTC 13669 || ||||| | || |||||||||||||| || || || ||| |||| || ||| ||| Sbjct 3279 ACGCTCATCCTAACCGAGGGTGATTCGGCCAAGACGCTTGCGATTGCCGGACTCGGCGTC 3220 Query 13670 GTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAA 13710 || ||||| || ||| ||| ||||||||||| || || || Sbjct 3219 GTCGGTCGCGACAACTTCGGCGTGTTCCCACTGCGTGGCAA 3179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596503313660320