Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq523 228 1e-53 seq522 228 1e-53 seq4264 172 9e-37 seq622 165 1e-34 seq240 114 2e-19 seq157 102 1e-15 seq723 100 5e-15 seq8511 87.8 3e-11 >seq523 Length=1154 Score = 228 bits (252), Expect = 1e-53 Identities = 247/327 (76%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||| | |||||| ||| ||||||||||||||| ||||||||| Sbjct 839 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCCGCGCTTC 780 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||| ||| ||||||||| |||||||||||||||||||| || Sbjct 779 TTGAGCCAGAAGATGGACGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAAC 720 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | ||||| |||||| | || | | | | ||| | |||||||||| | | ||||||| Sbjct 719 GCAACGAGGCGCTCGCCGAACGAGCTCTG---CTCGTCGTTGATCCACGTGAGCGCCCAC 663 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| | |||| |||| | || ||||| || |||||| || || Sbjct 662 TCAGCCTTGCGCTTCACGCAGGGGATGGTCTCGATCGCATCGAAGAGGAACTCGCGCTGC 603 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||| ||||| | ||| |||||||||||||||||||||||||| ||||||||||| || Sbjct 602 GCCGGCTCCTTAATGTATGTGTCGATGAGGAGCGAGTAGGTCTCAGAGTGGATGTTCTCC 543 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667 || ||||||||||| || |||||| Sbjct 542 ATCATAATCTGGAAGCCGTAGAAGCAG 516 Score = 127 bits (140), Expect = 3e-23 Identities = 140/184 (76%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 796176 GAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGAC 796235 |||||| || ||||||||| ||||||||||| ||| ||||| ||||||||||| Sbjct 486 GAAGCGTTCGAGCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGCGAAGAAGGCGAGGAC 427 Query 796236 GTGCTTGATAAAGTGACGCTCGTCGTCGCTGA-GCG--AGACCCAGTGGACCGTGTCGGC 796292 |||| ||| ||||||||||||| |||| | | ||| | ||||| | |||| Sbjct 426 GTGCGAGATGAAGTGACGCTCGTTGTCGTTCAGGCGGTTGCTCCAGTCGTGGATGTCCTT 367 Query 796293 GCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCA 796352 | ||||| | ||||||||| ||||| || |||||||| ||||| |||||||||| ||| Sbjct 366 GGACAGGTCCATCTCCTCGGCAGTCCAGAACGAGGCCTCAGCCTTCTTGTACATCTGCCA 307 Query 796353 TATC 796356 |||| Sbjct 306 TATC 303 Score = 93.3 bits (102), Expect = 7e-13 Identities = 102/132 (77%), Gaps = 8/132 (6%) Strand=Plus/Minus Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGC--CGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| ||||| | ||| ||||||| ||| |||||||||| || |||| Sbjct 1154 GAGATCATGTCCATGAAGTCGAAAGGGTTGGTGACGTT--GTAGTGCTTCGAGCCACCGA 1097 Query 794011 G--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 | ||||| || ||||||||||| ||||| || ||||||||||||||||| |||||| Sbjct 1096 GGGCGACG--AGTAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCTTGGCGTT 1039 Query 794069 CATGCCGATGAG 794080 ||||||||| || Sbjct 1038 CATGCCGATCAG 1027 >seq522 Length=1154 Score = 228 bits (252), Expect = 1e-53 Identities = 247/327 (76%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||| | |||||| ||| ||||||||||||||| ||||||||| Sbjct 839 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCCGCGCTTC 780 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||| ||| ||||||||| |||||||||||||||||||| || Sbjct 779 TTGAGCCAGAAGATGGAGGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAAC 720 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | ||||| |||||| | || | | | | ||| | |||||||||| | | ||||||| Sbjct 719 GCAACGAGGCGCTCGCCGAACGAGCTCTG---CTCGTCGTTGATCCACGTGAGCGCCCAC 663 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| | |||| |||| | || ||||| || |||||| || || Sbjct 662 TCAGCCTTGCGCTTCACGCAGGGGATGGTCTCGATCGCATCGAAGAGGAACTCGCGCTGC 603 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||| ||||| | ||| |||||||||||||||||||||||||| ||||||||||| || Sbjct 602 GCCGGCTCCTTAATGTATGTGTCGATGAGGAGCGAGTAGGTCTCAGAGTGGATGTTCTCC 543 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667 || ||||||||||| || |||||| Sbjct 542 ATCATAATCTGGAAGCCGTAGAAGCAG 516 Score = 123 bits (136), Expect = 4e-22 Identities = 139/184 (76%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 796176 GAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGAC 796235 |||||| || ||||||||| ||||||||||| ||| ||||| ||||| ||||| Sbjct 486 GAAGCGTTCGAGCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGCGAAGAAGGCAAGGAC 427 Query 796236 GTGCTTGATAAAGTGACGCTCGTCGTCGCTGA-GCG--AGACCCAGTGGACCGTGTCGGC 796292 |||| ||| ||||||||||||| |||| | | ||| | ||||| | |||| Sbjct 426 GTGCGAGATGAAGTGACGCTCGTTGTCGTTCAGGCGGTTGCTCCAGTCGTGGATGTCCTT 367 Query 796293 GCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCA 796352 | ||||| | ||||||||| ||||| || |||||||| ||||| |||||||||| ||| Sbjct 366 GGACAGGTCCATCTCCTCGGCAGTCCAGAACGAGGCCTCAGCCTTCTTGTACATCTGCCA 307 Query 796353 TATC 796356 |||| Sbjct 306 TATC 303 Score = 93.3 bits (102), Expect = 7e-13 Identities = 102/132 (77%), Gaps = 8/132 (6%) Strand=Plus/Minus Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGC--CGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| ||||| | ||| ||||||| ||| |||||||||| || |||| Sbjct 1154 GAGATCATGTCCATGAAGTCGAAGGGGTTGGTGACGTT--GTAGTGCTTCGAGCCACCGA 1097 Query 794011 G--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 | ||||| || ||||||||||| ||||| || ||||||||||||||||| |||||| Sbjct 1096 GGGCGACG--AGTAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCTTGGCGTT 1039 Query 794069 CATGCCGATGAG 794080 ||||||||| || Sbjct 1038 CATGCCGATCAG 1027 >seq4264 Length=4713 Score = 172 bits (190), Expect = 9e-37 Identities = 196/263 (75%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || ||||| ||||| ||| ||| |||| ||||||||||| | ||||| Sbjct 2986 GCCCTGGTCAACGTAGCGGGCCGTCGCGTCGAAGGCGCGAAGCATGGGCACGATACCGTT 3045 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| |||||| || || || | ||| | || | || || | ||||| | | Sbjct 3046 CGACATGCCGTTCGTACCGGCAATGTACGACCCGGTCGCACGAATGTTGTGGATGTTGAG 3105 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||||||||| |||| ||| ||||| | ||| || || || ||||||||||||||||| Sbjct 3106 GCCGATGCCGCCCGCCGTCTTCGAGATCATCGCACAGTTCTTGAGCGTCTCGTAGATGCC 3165 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||||||||||||| ||||||| | ||| ||||| |||| | || | || | || Sbjct 3166 CTCGATCGAGTCGTCCTTCATACAGACCAGGAAGCAGGACGCGAGCTGGTTGTGCACTGT 3225 Query 2073777 GCCGGCATTGAAGAGCGTGGGCG 2073799 |||||| ||||||||||| |||| Sbjct 3226 GCCGGCGTTGAAGAGCGTCGGCG 3248 Score = 93.3 bits (102), Expect = 7e-13 Identities = 172/243 (71%), Gaps = 16/243 (7%) Strand=Plus/Plus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||||||| ||||| ||||| || ||||| || || ||||||||||| Sbjct 1442 TGGTCGACGGTGAACTGGATCGCGTTCGCGGCTGGGCGGGTACGGAGGTAGTACATGCCC 1501 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGC-ATT--C 2069367 |||||||| |||| ||| ||||| |||||| || || || | | ||| | Sbjct 1502 GTCTTGAGCCCGCTCTTCCAGCCGTAGAAGTGCAT---GCTGGTGAGCTGGCCGATTGAC 1558 Query 2069368 GG-GACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCG-CGCGGTCGG 2069425 || ||| ||| || | |||||| ||||| |||| | | | |||| | ||||| | Sbjct 1559 GGCGACTGCA-GGTGCACGTTGAGGGACTGCGACTGG-CAAATGAAGGCGCCCCGGTCCG 1616 Query 2069426 CCGCCATGTCGATGGTCACGCGGTT---GGACACCTCCCACACGGTCTTGAACAGGGCCT 2069482 | || | || | |||||| || || | |||||| ||||||||| | || |||| Sbjct 1617 CAGCGAGCTCCA---GCACGCGCTTCTGCGAGATCTCCCAGACGGTCTTGTAGAGCGCCT 1673 Query 2069483 TGA 2069485 ||| Sbjct 1674 TGA 1676 Score = 93.3 bits (102), Expect = 7e-13 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936 ||||||| | || ||||| ||||| || ||| || ||||||||||||||||| | Sbjct 2853 TCCACAGCGCATAGAAGAGGTCGCGGGCACGGGATTCTTCCTTGCCGTGGTTCTTACGGA 2912 Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 2071996 |||| || |||| | | |||||||||||||||||| |||||| ||| ||||| || Sbjct 2913 GGTCAAGGAAGTCAAAAACGTCGGCGTGCCACGGCTCAAGGTAGATGGCGAAGGCACCGG 2972 Query 2071997 TGCGCTTGCCGCCGCC 2072012 || ||| |||||| Sbjct 2973 GTCGTTTGTTGCCGCC 2988 >seq622 Length=23078 Score = 165 bits (182), Expect = 1e-34 Identities = 359/525 (68%), Gaps = 21/525 (4%) Strand=Plus/Plus Query 653618 GTCAAGATCGTCACCCGCGCCATGCGCCAGCCCG-AGGTGGGCGACAAACTGTCGTCGCG 653676 ||||||||| || |||| ||| |||| | |||| || | |||||||| | |||| || Sbjct 2890 GTCAAGATCCGCATCCGCTCCACGCGC-ATCCCGCAGATTGGCGACAAGTTCGCGTCCCG 2948 Query 653677 CCACGGGCAAAAGGGCACCGTGGGCAGCGTGCGCTCGACCG-AGGAAATGCCGTGGTCGC 653735 ||||| || ||||||||||| |||| | | | || | | |||| ||||||| || Sbjct 2949 GCACGGCCAGAAGGGCACCGTCGGCATCACGTAC-CGCCAGGAGGACATGCCGTACACGG 3007 Query 653736 CGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGCACGCCATCCCGTCGCGCATGA 653795 | || ||| | |||||||||| |||||||||||||||| |||||||||||||||| Sbjct 3008 C---CGACGGCATCGTGCCCGACATCATCATCAACCCGCACGCGATCCCGTCGCGCATGA 3064 Query 653796 CCATGGGCAAGATGATGGAGGCCCTCCTGGGCAAGGTGGC-CTGCCGCGAGGGCTACGTG 653854 | || ||| | || | ||| || || |||||| || || || ||| | | | Sbjct 3065 CGATCGGCCATTTGGTCGAGTGTCTGCTCTCCAAGGTCGCGACGCTGC-TCGGCCAGGAG 3123 Query 653855 GGCGACGGCACCCCGTTTGGCGGCGTCACCGTNNNNNNNNNNNNNNNNNAGTTGGCCCGC 653914 ||||||| || ||||| | | | || || | | || | | Sbjct 3124 GGCGACGCGACGCCGTTCACGGACCTGACGGTCGAAAGCGTGTCGCAGGTGCT-GCGCTC 3182 Query 653915 CACGGG-TGCGAG-CGCTACGGCAAGGAGGTGCTCTACCACCCGCACACGG---GCGAGC 653969 || ||| | | || ||| ||| ||||| | |||||| ||||| | || ||| Sbjct 3183 CAAGGGCTTCCAGTCGC-GCGGGCTCGAGGTCATGTACCACGGCCACACCGGCCGCAAGC 3241 Query 653970 CCATGGAGGCGTTGATCT-TTTCGGCGCCGGTCTACTACCAGGCCCTGCGCCACGTGGCC 654028 || ||||| ||||| ||||| ||| ||||||||| ||| ||| ||| | Sbjct 3242 ---TGCAGGCGCAGATCTACCTCGGC-CCGACGTACTACCAGCGCCTCAAGCACATGGTC 3297 Query 654029 ATCGACAAGATCCACGCCCGGCCGCGCGGCCCCGTGCAGATGCTCACCAAGCAGCCGGTC 654088 ||||||||||||| | || |||| || ||||| ||||| |||||| ||||| ||| Sbjct 3298 GACGACAAGATCCACTCACGTGCGCGGGGGCCCGTCCAGATCCTCACCCGCCAGCCCGTC 3357 Query 654089 GAGGGCCGGTCGCGCTCGGGCGGCTTTCGCCTCGGAGAGATGGAG 654133 |||||||| |||||| |||||| | ||| |||||||||||||| Sbjct 3358 GAGGGCCGCTCGCGCGACGGCGGCCTCCGCTTCGGAGAGATGGAG 3402 >seq240 Length=16179 Score = 114 bits (126), Expect = 2e-19 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 431046 AACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATGTTTCTGCACATGATCGGCGGGCGC 431105 ||||||||| |||||| |||| ||| |||| | || | ||| || | ||| ||| Sbjct 12081 AACTCGTACCTGCGCGGGCTCACTCCGCACGAGTTCTTCTTCCACGCCATGGCCGGTCGC 12022 Query 431106 GAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATCCAGCGTCG 431161 ||||||||| |||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 12021 GAGGGTCTCATCGACACGGCTGTCAAGACGGCCGAGACGGGTTACATCCAGCGTCG 11966 >seq157 Length=115213 Score = 102 bits (112), Expect = 1e-15 Identities = 133/182 (73%), Gaps = 9/182 (5%) Strand=Plus/Minus Query 2411415 CATCTTGCCGTCCTTGGTGAGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCGCTTGCG 2411474 |||||| ||| || | |||||| ||||||| || ||| | |||||| |||||| Sbjct 86263 CATCTTCCCGCCC---GCGAGGCCGGGCACCATCGCGTTCATCAGGTGCGCGCGCTTCGC 86207 Query 2411475 GTAGCCCAGCGCCGGCAGGT---GGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCG 2411531 ||| || ||| ||| |||| | || ||| || | |||||||||||||||||| Sbjct 86206 GTATCCGAGCCGCGGGAGGTACAGCTC---CGCGAACGTGAAGATCTTGCGCTGGTCGGC 86150 Query 2411532 CCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTA 2411591 ||||| |||||| |||| | | ||||||| ||||||||| ||||||| |||||| Sbjct 86149 GCCGCCGAACTGGAAGTCGCAGCCCAGGTGCTCCTCGTCGAGCGCCTGCAGCCCCGGGTA 86090 Query 2411592 GA 2411593 || Sbjct 86089 GA 86088 >seq723 Length=51713 Score = 100 bits (110), Expect = 5e-15 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 2070133 AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGC 2070192 || ||||| ||||| |||||||||||||||||||| ||||| || || ||||||||| Sbjct 49163 AAAGCGTCCGCCAGACCCTGCACGCCGACGCCCATTGGCCGATGACGAAGGTTCGAGACA 49222 Query 2070193 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 || |||||||| | ||||||| ||||||||| || Sbjct 49223 CGAGCCTCGGGTAGGGGGTAGTAGTTGATGTCAAT 49257 >seq8511 Length=60514 Score = 87.8 bits (96), Expect = 3e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 ||||| || |||| || |||| ||||||||||| || ||||| | ||| | ||||| Sbjct 29338 GCCTCAGTCGCGATACGCTCGAAGATGTCGTTGACGAAGGAGTTGAGGATAGCCATCGCC 29397 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||||| || ||| ||||| |||||||||||||| Sbjct 29398 TTGTTGGAGATACCAGTGTCCGGGTGGACCTGCTTGAGCAC 29438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915300836527271