Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07-
25] 8,889 sequences; 36,136,062 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq523 228 1e-53
seq522 228 1e-53
seq4264 172 9e-37
seq622 165 1e-34
seq240 114 2e-19
seq157 102 1e-15
seq723 100 5e-15
seq8511 87.8 3e-11
>seq523
Length=1154
Score = 228 bits (252), Expect = 1e-53
Identities = 247/327 (76%), Gaps = 3/327 (1%)
Strand=Plus/Minus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| |||||||| ||| | |||||| ||| ||||||||||||||| |||||||||
Sbjct 839 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCCGCGCTTC 780
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|||||||| ||||||| ||| ||||||||| |||||||||||||||||||| ||
Sbjct 779 TTGAGCCAGAAGATGGACGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAAC 720
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520
| ||||| |||||| | || | | | | ||| | |||||||||| | | |||||||
Sbjct 719 GCAACGAGGCGCTCGCCGAACGAGCTCTG---CTCGTCGTTGATCCACGTGAGCGCCCAC 663
Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580
|| ||||| | |||| |||| | || ||||| || |||||| || ||
Sbjct 662 TCAGCCTTGCGCTTCACGCAGGGGATGGTCTCGATCGCATCGAAGAGGAACTCGCGCTGC 603
Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640
|||| ||||| | ||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 602 GCCGGCTCCTTAATGTATGTGTCGATGAGGAGCGAGTAGGTCTCAGAGTGGATGTTCTCC 543
Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667
|| ||||||||||| || ||||||
Sbjct 542 ATCATAATCTGGAAGCCGTAGAAGCAG 516
Score = 127 bits (140), Expect = 3e-23
Identities = 140/184 (76%), Gaps = 3/184 (2%)
Strand=Plus/Minus
Query 796176 GAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGAC 796235
|||||| || ||||||||| ||||||||||| ||| ||||| |||||||||||
Sbjct 486 GAAGCGTTCGAGCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGCGAAGAAGGCGAGGAC 427
Query 796236 GTGCTTGATAAAGTGACGCTCGTCGTCGCTGA-GCG--AGACCCAGTGGACCGTGTCGGC 796292
|||| ||| ||||||||||||| |||| | | ||| | ||||| | ||||
Sbjct 426 GTGCGAGATGAAGTGACGCTCGTTGTCGTTCAGGCGGTTGCTCCAGTCGTGGATGTCCTT 367
Query 796293 GCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCA 796352
| ||||| | ||||||||| ||||| || |||||||| ||||| |||||||||| |||
Sbjct 366 GGACAGGTCCATCTCCTCGGCAGTCCAGAACGAGGCCTCAGCCTTCTTGTACATCTGCCA 307
Query 796353 TATC 796356
||||
Sbjct 306 TATC 303
Score = 93.3 bits (102), Expect = 7e-13
Identities = 102/132 (77%), Gaps = 8/132 (6%)
Strand=Plus/Minus
Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGC--CGTCAGGTAGTGCTTCTCGCACCCGA 794010
||||||| ||||| | ||| ||||||| ||| |||||||||| || ||||
Sbjct 1154 GAGATCATGTCCATGAAGTCGAAAGGGTTGGTGACGTT--GTAGTGCTTCGAGCCACCGA 1097
Query 794011 G--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068
| ||||| || ||||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 1096 GGGCGACG--AGTAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCTTGGCGTT 1039
Query 794069 CATGCCGATGAG 794080
||||||||| ||
Sbjct 1038 CATGCCGATCAG 1027
>seq522
Length=1154
Score = 228 bits (252), Expect = 1e-53
Identities = 247/327 (76%), Gaps = 3/327 (1%)
Strand=Plus/Minus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| |||||||| ||| | |||||| ||| ||||||||||||||| |||||||||
Sbjct 839 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCCGCGCTTC 780
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|||||||| ||||||| ||| ||||||||| |||||||||||||||||||| ||
Sbjct 779 TTGAGCCAGAAGATGGAGGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAAC 720
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520
| ||||| |||||| | || | | | | ||| | |||||||||| | | |||||||
Sbjct 719 GCAACGAGGCGCTCGCCGAACGAGCTCTG---CTCGTCGTTGATCCACGTGAGCGCCCAC 663
Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580
|| ||||| | |||| |||| | || ||||| || |||||| || ||
Sbjct 662 TCAGCCTTGCGCTTCACGCAGGGGATGGTCTCGATCGCATCGAAGAGGAACTCGCGCTGC 603
Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640
|||| ||||| | ||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 602 GCCGGCTCCTTAATGTATGTGTCGATGAGGAGCGAGTAGGTCTCAGAGTGGATGTTCTCC 543
Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667
|| ||||||||||| || ||||||
Sbjct 542 ATCATAATCTGGAAGCCGTAGAAGCAG 516
Score = 123 bits (136), Expect = 4e-22
Identities = 139/184 (76%), Gaps = 3/184 (2%)
Strand=Plus/Minus
Query 796176 GAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGAC 796235
|||||| || ||||||||| ||||||||||| ||| ||||| ||||| |||||
Sbjct 486 GAAGCGTTCGAGCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGCGAAGAAGGCAAGGAC 427
Query 796236 GTGCTTGATAAAGTGACGCTCGTCGTCGCTGA-GCG--AGACCCAGTGGACCGTGTCGGC 796292
|||| ||| ||||||||||||| |||| | | ||| | ||||| | ||||
Sbjct 426 GTGCGAGATGAAGTGACGCTCGTTGTCGTTCAGGCGGTTGCTCCAGTCGTGGATGTCCTT 367
Query 796293 GCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCA 796352
| ||||| | ||||||||| ||||| || |||||||| ||||| |||||||||| |||
Sbjct 366 GGACAGGTCCATCTCCTCGGCAGTCCAGAACGAGGCCTCAGCCTTCTTGTACATCTGCCA 307
Query 796353 TATC 796356
||||
Sbjct 306 TATC 303
Score = 93.3 bits (102), Expect = 7e-13
Identities = 102/132 (77%), Gaps = 8/132 (6%)
Strand=Plus/Minus
Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGC--CGTCAGGTAGTGCTTCTCGCACCCGA 794010
||||||| ||||| | ||| ||||||| ||| |||||||||| || ||||
Sbjct 1154 GAGATCATGTCCATGAAGTCGAAGGGGTTGGTGACGTT--GTAGTGCTTCGAGCCACCGA 1097
Query 794011 G--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068
| ||||| || ||||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 1096 GGGCGACG--AGTAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCTTGGCGTT 1039
Query 794069 CATGCCGATGAG 794080
||||||||| ||
Sbjct 1038 CATGCCGATCAG 1027
>seq4264
Length=4713
Score = 172 bits (190), Expect = 9e-37
Identities = 196/263 (75%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596
|| |||||| || ||||| ||||| ||| ||| |||| ||||||||||| | |||||
Sbjct 2986 GCCCTGGTCAACGTAGCGGGCCGTCGCGTCGAAGGCGCGAAGCATGGGCACGATACCGTT 3045
Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656
||| |||||| || || || | ||| | || | || || | ||||| | |
Sbjct 3046 CGACATGCCGTTCGTACCGGCAATGTACGACCCGGTCGCACGAATGTTGTGGATGTTGAG 3105
Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716
|||||||||||| |||| ||| ||||| | ||| || || || |||||||||||||||||
Sbjct 3106 GCCGATGCCGCCCGCCGTCTTCGAGATCATCGCACAGTTCTTGAGCGTCTCGTAGATGCC 3165
Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776
||||||||||||| ||||||| | ||| ||||| |||| | || | || | ||
Sbjct 3166 CTCGATCGAGTCGTCCTTCATACAGACCAGGAAGCAGGACGCGAGCTGGTTGTGCACTGT 3225
Query 2073777 GCCGGCATTGAAGAGCGTGGGCG 2073799
|||||| ||||||||||| ||||
Sbjct 3226 GCCGGCGTTGAAGAGCGTCGGCG 3248
Score = 93.3 bits (102), Expect = 7e-13
Identities = 172/243 (71%), Gaps = 16/243 (7%)
Strand=Plus/Plus
Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310
||||||||||| |||||||| ||||| ||||| || ||||| || || |||||||||||
Sbjct 1442 TGGTCGACGGTGAACTGGATCGCGTTCGCGGCTGGGCGGGTACGGAGGTAGTACATGCCC 1501
Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGC-ATT--C 2069367
|||||||| |||| ||| ||||| |||||| || || || | | ||| |
Sbjct 1502 GTCTTGAGCCCGCTCTTCCAGCCGTAGAAGTGCAT---GCTGGTGAGCTGGCCGATTGAC 1558
Query 2069368 GG-GACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCG-CGCGGTCGG 2069425
|| ||| ||| || | |||||| ||||| |||| | | | |||| | ||||| |
Sbjct 1559 GGCGACTGCA-GGTGCACGTTGAGGGACTGCGACTGG-CAAATGAAGGCGCCCCGGTCCG 1616
Query 2069426 CCGCCATGTCGATGGTCACGCGGTT---GGACACCTCCCACACGGTCTTGAACAGGGCCT 2069482
| || | || | |||||| || || | |||||| ||||||||| | || ||||
Sbjct 1617 CAGCGAGCTCCA---GCACGCGCTTCTGCGAGATCTCCCAGACGGTCTTGTAGAGCGCCT 1673
Query 2069483 TGA 2069485
|||
Sbjct 1674 TGA 1676
Score = 93.3 bits (102), Expect = 7e-13
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936
||||||| | || ||||| ||||| || ||| || ||||||||||||||||| |
Sbjct 2853 TCCACAGCGCATAGAAGAGGTCGCGGGCACGGGATTCTTCCTTGCCGTGGTTCTTACGGA 2912
Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 2071996
|||| || |||| | | |||||||||||||||||| |||||| ||| ||||| ||
Sbjct 2913 GGTCAAGGAAGTCAAAAACGTCGGCGTGCCACGGCTCAAGGTAGATGGCGAAGGCACCGG 2972
Query 2071997 TGCGCTTGCCGCCGCC 2072012
|| ||| ||||||
Sbjct 2973 GTCGTTTGTTGCCGCC 2988
>seq622
Length=23078
Score = 165 bits (182), Expect = 1e-34
Identities = 359/525 (68%), Gaps = 21/525 (4%)
Strand=Plus/Plus
Query 653618 GTCAAGATCGTCACCCGCGCCATGCGCCAGCCCG-AGGTGGGCGACAAACTGTCGTCGCG 653676
||||||||| || |||| ||| |||| | |||| || | |||||||| | |||| ||
Sbjct 2890 GTCAAGATCCGCATCCGCTCCACGCGC-ATCCCGCAGATTGGCGACAAGTTCGCGTCCCG 2948
Query 653677 CCACGGGCAAAAGGGCACCGTGGGCAGCGTGCGCTCGACCG-AGGAAATGCCGTGGTCGC 653735
||||| || ||||||||||| |||| | | | || | | |||| ||||||| ||
Sbjct 2949 GCACGGCCAGAAGGGCACCGTCGGCATCACGTAC-CGCCAGGAGGACATGCCGTACACGG 3007
Query 653736 CGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGCACGCCATCCCGTCGCGCATGA 653795
| || ||| | |||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 3008 C---CGACGGCATCGTGCCCGACATCATCATCAACCCGCACGCGATCCCGTCGCGCATGA 3064
Query 653796 CCATGGGCAAGATGATGGAGGCCCTCCTGGGCAAGGTGGC-CTGCCGCGAGGGCTACGTG 653854
| || ||| | || | ||| || || |||||| || || || ||| | | |
Sbjct 3065 CGATCGGCCATTTGGTCGAGTGTCTGCTCTCCAAGGTCGCGACGCTGC-TCGGCCAGGAG 3123
Query 653855 GGCGACGGCACCCCGTTTGGCGGCGTCACCGTNNNNNNNNNNNNNNNNNAGTTGGCCCGC 653914
||||||| || ||||| | | | || || | | || | |
Sbjct 3124 GGCGACGCGACGCCGTTCACGGACCTGACGGTCGAAAGCGTGTCGCAGGTGCT-GCGCTC 3182
Query 653915 CACGGG-TGCGAG-CGCTACGGCAAGGAGGTGCTCTACCACCCGCACACGG---GCGAGC 653969
|| ||| | | || ||| ||| ||||| | |||||| ||||| | || |||
Sbjct 3183 CAAGGGCTTCCAGTCGC-GCGGGCTCGAGGTCATGTACCACGGCCACACCGGCCGCAAGC 3241
Query 653970 CCATGGAGGCGTTGATCT-TTTCGGCGCCGGTCTACTACCAGGCCCTGCGCCACGTGGCC 654028
|| ||||| ||||| ||||| ||| ||||||||| ||| ||| ||| |
Sbjct 3242 ---TGCAGGCGCAGATCTACCTCGGC-CCGACGTACTACCAGCGCCTCAAGCACATGGTC 3297
Query 654029 ATCGACAAGATCCACGCCCGGCCGCGCGGCCCCGTGCAGATGCTCACCAAGCAGCCGGTC 654088
||||||||||||| | || |||| || ||||| ||||| |||||| ||||| |||
Sbjct 3298 GACGACAAGATCCACTCACGTGCGCGGGGGCCCGTCCAGATCCTCACCCGCCAGCCCGTC 3357
Query 654089 GAGGGCCGGTCGCGCTCGGGCGGCTTTCGCCTCGGAGAGATGGAG 654133
|||||||| |||||| |||||| | ||| ||||||||||||||
Sbjct 3358 GAGGGCCGCTCGCGCGACGGCGGCCTCCGCTTCGGAGAGATGGAG 3402
>seq240
Length=16179
Score = 114 bits (126), Expect = 2e-19
Identities = 95/116 (82%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 431046 AACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATGTTTCTGCACATGATCGGCGGGCGC 431105
||||||||| |||||| |||| ||| |||| | || | ||| || | ||| |||
Sbjct 12081 AACTCGTACCTGCGCGGGCTCACTCCGCACGAGTTCTTCTTCCACGCCATGGCCGGTCGC 12022
Query 431106 GAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATCCAGCGTCG 431161
||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 12021 GAGGGTCTCATCGACACGGCTGTCAAGACGGCCGAGACGGGTTACATCCAGCGTCG 11966
>seq157
Length=115213
Score = 102 bits (112), Expect = 1e-15
Identities = 133/182 (73%), Gaps = 9/182 (5%)
Strand=Plus/Minus
Query 2411415 CATCTTGCCGTCCTTGGTGAGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCGCTTGCG 2411474
|||||| ||| || | |||||| ||||||| || ||| | |||||| ||||||
Sbjct 86263 CATCTTCCCGCCC---GCGAGGCCGGGCACCATCGCGTTCATCAGGTGCGCGCGCTTCGC 86207
Query 2411475 GTAGCCCAGCGCCGGCAGGT---GGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCG 2411531
||| || ||| ||| |||| | || ||| || | ||||||||||||||||||
Sbjct 86206 GTATCCGAGCCGCGGGAGGTACAGCTC---CGCGAACGTGAAGATCTTGCGCTGGTCGGC 86150
Query 2411532 CCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTA 2411591
||||| |||||| |||| | | ||||||| ||||||||| ||||||| ||||||
Sbjct 86149 GCCGCCGAACTGGAAGTCGCAGCCCAGGTGCTCCTCGTCGAGCGCCTGCAGCCCCGGGTA 86090
Query 2411592 GA 2411593
||
Sbjct 86089 GA 86088
>seq723
Length=51713
Score = 100 bits (110), Expect = 5e-15
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 2070133 AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGC 2070192
|| ||||| ||||| |||||||||||||||||||| ||||| || || |||||||||
Sbjct 49163 AAAGCGTCCGCCAGACCCTGCACGCCGACGCCCATTGGCCGATGACGAAGGTTCGAGACA 49222
Query 2070193 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227
|| |||||||| | ||||||| ||||||||| ||
Sbjct 49223 CGAGCCTCGGGTAGGGGGTAGTAGTTGATGTCAAT 49257
>seq8511
Length=60514
Score = 87.8 bits (96), Expect = 3e-11
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663
||||| || |||| || |||| ||||||||||| || ||||| | ||| | |||||
Sbjct 29338 GCCTCAGTCGCGATACGCTCGAAGATGTCGTTGACGAAGGAGTTGAGGATAGCCATCGCC 29397
Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
||||||||||| || ||| ||||| ||||||||||||||
Sbjct 29398 TTGTTGGAGATACCAGTGTCCGGGTGGACCTGCTTGAGCAC 29438
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915300836527271
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |