Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq523 89.7 5e-13 seq522 84.2 2e-11 >seq523 Length=1154 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 110728 GTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTTTAAGAAAGAATCGTTC 110787 ||| |||||| |||| | ||||||||| |||||||| ||||| | ||| || || Sbjct 465 GTTGACGATGCCGTCCGAGGCAGCGAAGAAGGCGAGGACGTGCGAGATGAAGTGACGCTC 406 Query 110788 CTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACATGTCGATCTCTTCGAC 110847 ||||||||||| ||| ||||||| | | ||||||||||| ||| ||||| ||| | Sbjct 405 GTTGTCGTTCAGGCGGTTGCTCCAGTCGTGGATGTCCTTGGACAGGTCCATCTCCTCGGC 346 Query 110848 CTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCA 110886 ||||| | | | |||||||||||| ||||| Sbjct 345 AGTCCAGAACGAGGCCTCAGCCTTCTTGTACATCTGCCA 307 >seq522 Length=1154 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 110728 GTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTTTAAGAAAGAATCGTTC 110787 ||| |||||| |||| | ||||||||| ||||| || ||||| | ||| || || Sbjct 465 GTTGACGATGCCGTCCGAGGCAGCGAAGAAGGCAAGGACGTGCGAGATGAAGTGACGCTC 406 Query 110788 CTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACATGTCGATCTCTTCGAC 110847 ||||||||||| ||| ||||||| | | ||||||||||| ||| ||||| ||| | Sbjct 405 GTTGTCGTTCAGGCGGTTGCTCCAGTCGTGGATGTCCTTGGACAGGTCCATCTCCTCGGC 346 Query 110848 CTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCA 110886 ||||| | | | |||||||||||| ||||| Sbjct 345 AGTCCAGAACGAGGCCTCAGCCTTCTTGTACATCTGCCA 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445044944448480