Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq523 279 7e-69 seq522 275 9e-68 seq622 183 4e-40 seq4264 154 2e-31 seq240 96.9 5e-14 seq1779 86.0 9e-11 seq723 86.0 9e-11 >seq523 Length=1154 Score = 279 bits (308), Expect = 7e-69 Identities = 394/542 (73%), Gaps = 15/542 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| | |||||| || ||||| |||||||| || ||||| ||||||||| | |||| Sbjct 303 GATATGGCAGATGTAC-AAGAAGGCTGAGGCCTCGTTCTGGACTGCCGAGGAGATGGACC 361 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | ||||| ||| ||| |||| ||||||| || |||||| Sbjct 362 TGTCCAAGGACATCCACGACTGGAGCAACCGCCTGAACGACAACGAGCGTCACTTCATCT 421 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||||||||| || ||| ||| || |||||||| |||||||||| || Sbjct 422 CGCACGTCCTCGCCTTCTT-CGCTGCCTCGGACGGCATCGTCAACGAGAACCTGCTCGAA 480 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | ||||| || | | || || || | || ||||| |||||||| Sbjct 481 CGCTTCTCGGGTGAGGTGCAGATCGCTGAAGCGCGCTGCTTCTACGGCTTCCAGATTATG 540 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || |||||||||||||| |||||||||||||| |||||||| ||| | ||||| ||| Sbjct 541 ATGGAGAACATCCACTCTGAGACCTACTCGCTCCTCATCGACACATACATTAAGGAGCCG 600 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 | || || |||||| || ||||| || | || | |||| | ||||| Sbjct 601 GCGCAGCGCGAGTTCCTCTTCGATGCGATCGAGACCATCCCCTGCGTGAAGCGCAAGGCT 660 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGAGCGGCTCGT 1456189 || |||||| | | |||||||||| | ||| | |||| || | |||||| ||||| Sbjct 661 GAGTGGGCGCTCACGTGGATCAACGACGAGCAGAGCTCG----TTCGGCGAGCGCCTCGT 716 Query 1456190 CGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGC 1456247 | || |||| ||||||||||||||| ||||||||| ||| ||| ||||||| |||| Sbjct 717 TGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTC-GCGTCCATCTTCTGGC 775 Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGAC 1456307 ||||||||||||| ||||||||||| | || ||| |||||| | ||| |||||| Sbjct 776 TCAAGAAGCGCGGACTCATGCCCGG-CCTCACCTTCTCCAACGAGCTCATCTCGCGCGAC 834 Query 1456308 GA 1456309 || Sbjct 835 GA 836 >seq522 Length=1154 Score = 275 bits (304), Expect = 9e-68 Identities = 391/541 (72%), Gaps = 13/541 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| | |||||| || ||||| |||||||| || ||||| ||||||||| | |||| Sbjct 303 GATATGGCAGATGTAC-AAGAAGGCTGAGGCCTCGTTCTGGACTGCCGAGGAGATGGACC 361 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | ||||| ||| ||| |||| ||||||| || |||||| Sbjct 362 TGTCCAAGGACATCCACGACTGGAGCAACCGCCTGAACGACAACGAGCGTCACTTCATCT 421 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||| ||||| || ||| ||| || |||||||| |||||||||| || Sbjct 422 CGCACGTCCTTGCCTTCTT-CGCTGCCTCGGACGGCATCGTCAACGAGAACCTGCTCGAA 480 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | ||||| || | | || || || | || ||||| |||||||| Sbjct 481 CGCTTCTCGGGCGAGGTGCAGATCGCTGAAGCGCGCTGCTTCTACGGCTTCCAGATTATG 540 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || |||||||||||||| |||||||||||||| |||||||| ||| | ||||| ||| Sbjct 541 ATGGAGAACATCCACTCTGAGACCTACTCGCTCCTCATCGACACATACATTAAGGAGCCG 600 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 | || || |||||| || ||||| || | || | |||| | ||||| Sbjct 601 GCGCAGCGCGAGTTCCTCTTCGATGCGATCGAGACCATCCCCTGCGTGAAGCGCAAGGCT 660 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGAGCGGCTCGT 1456189 || |||||| | | |||||||||| | ||| | |||| || | |||||| ||||| Sbjct 661 GAGTGGGCGCTCACGTGGATCAACGACGAGCAGAGCTCG----TTCGGCGAGCGCCTCGT 716 Query 1456190 CGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248 | || |||| ||||||||||||||| ||||||||| ||| | ||||||| ||||| Sbjct 717 TGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCCTCCATCTTCTGGCT 776 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACG 1456308 |||||||||||| ||||||||||| | || ||| |||||| | ||| ||||||| Sbjct 777 CAAGAAGCGCGGACTCATGCCCGG-CCTCACCTTCTCCAACGAGCTCATCTCGCGCGACG 835 Query 1456309 A 1456309 | Sbjct 836 A 836 >seq622 Length=23078 Score = 183 bits (202), Expect = 4e-40 Identities = 370/529 (70%), Gaps = 29/529 (5%) Strand=Plus/Minus Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317 |||||||||||| | ||||| |||||| |||||||||||||||||| ||||| ||| Sbjct 3402 CTCCATCTCTCCGAAGCGGAGGCCGCCGTCGCGCGAGCGGCCCTCGACGGGCTGGCGGGT 3343 Query 1600318 GAGCATCTGGACGGGGCCGCGTGGTCGGGCGTGAATCTTGTCGATGGCCACGTGGCGCAG 1600377 ||| ||||||||||| || || | || | ||| ||||||||| | ||| ||| || Sbjct 3342 GAGGATCTGGACGGGCCCCCGCGCACGTGAGTGGATCTTGTCGTCGACCATGTGCTTGAG 3283 Query 1600378 GGCCTGGTAGTAGACCGGCGCCG-TAAAGATCAACGCCTCCATGGGCT---CGCCGGTGT 1600433 | ||||||||| ||| |||| ||||| ||||| || ||| |||||||| Sbjct 3282 GCGCTGGTAGTACGTCGG-GCCGAGGTAGATCTGCGCCTGCA---GCTTGCGGCCGGTGT 3227 Query 1600434 GCGGGTGGTAGAGCACCTCCTTGCCGTAGCG-CTCGCATCCGTGGCGAGC-CAACTCGGC 1600491 | |||||| | |||| | ||| ||| || | | || | | |||| || | | | Sbjct 3226 GGCCGTGGTACATGACCT-CGAGCCCGCGCGACTGGAAGCCCTTG-GAGCGCAGCAC--C 3171 Query 1600492 GGCGACATCG---TCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTC 1600548 |||||| || ||||| || | | | || ||||| |||||||| | | | || Sbjct 3170 TGCGACA-CGCTTTCGACCGTCAGGTCCGTGAACGGCGTCGCGTCGCCCTCCT-GGCCGA 3113 Query 1600549 GCGGC-AGGCCACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACG 1600607 || || || |||||| || || ||| | || | ||| || ||||||||||||| Sbjct 3112 GCAGCGTCGCGACCTTGGAGAGCAGACACTCGACCAAATGGCCGATCGTCATGCGCGACG 3053 Query 1600608 GGATGGCGTGCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCA 1600667 |||| |||||||||||||| | ||||||||| | ||| || | || | |||| Sbjct 3052 GGATCGCGTGCGGGTTGATGATGATGTCGGGCACGATGCCGTCG---GCCGTGTACGGCA 2996 Query 1600668 TGTCCTC--GGTGGAGCGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAG 1600725 ||||||| || || || | |||| ||||||||||| |||||||| || |||| | Sbjct 2995 TGTCCTCCTGGCGGTACG--TGATGCCGACGGTGCCCTTCTGGCCGTGCCGGGACGCGAA 2938 Query 1600726 TTTGTCGCCCACCT-CGGGCTGGCGCATGGCCCGCGTGACGATCTTGAC 1600773 |||||||| | || |||| | |||| ||| || || ||||||||| Sbjct 2937 CTTGTCGCCAATCTGCGGGAT-GCGCGTGGAGCGGATGCGGATCTTGAC 2890 Score = 109 bits (120), Expect = 8e-18 Identities = 298/445 (67%), Gaps = 26/445 (6%) Strand=Plus/Minus Query 1601097 TCTTTTCGTCGTCGCGGTAGGTGCGCTTGATCATCGAGCGGAAGCCGCCGCGGTCGACAA 1601156 |||| ||| ||| |||| |||| | | ||| ||||| ||||||||||| Sbjct 2593 TCTTCTCGAGGTCCATGTAGCTGCGGTAGTACATGCTCCGGAACAGGCCGCGGTCGATGC 2534 Query 1601157 AGTCCTGCTTGAGCACGAGCGAGTCCTCCTGGTTGTAG---GGGTCGCTCATGATGGCCA 1601213 | ||| || | | | ||||||||||||||||||| | || || |||||| || | Sbjct 2533 TGCTCTGGTTCATGATTACCGAGTCCTCCTGGTTGTAGCCGGAGTAGCACATGATCGCGA 2474 Query 1601214 CGCGCGCATTCTGGCCCATCGGGAGGCGCGTGGCGCCGATGACGTCCTCCATGGCG---G 1601270 || ||| ||||| ||| |||| || | || | ||| || || ||| || | Sbjct 2473 CGATCGCGTTCTGCCCCG-CGGGCAGCTCCCGGAACT--TGAGGTGCTGCATCGCCTGCG 2417 Query 1601271 TCTGCACCAGCGGCACCTGCGGGTAGCACAGGGCGTGCGACACCGTGTCGATGGCATGGT 1601330 || | | |||||| ||| |||||| ||||| || || || |||||| || | || Sbjct 2416 TCGTCGCGAGCGGCTTCTGTGGGTAGTACAGGATGTTCGCCATCGTGTCCAT--CCGGGA 2359 Query 1601331 CGGCGTTGAGCGACACG---ACGGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGT 1601387 | | | | || | | | | || | |||||||||||| || ||||||| ||| Sbjct 2358 CAGA-TAGTTCGTGAGGTGGATGCCCATCGCCTGCTTGCCCATCGCGCTCTGGTACGTGT 2300 Query 1601388 TGCGCGGCGCCTGGTTGTGGTTGGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGA 1601447 | ||||| ||||||||||| | |||||||||||| ||||||| |||||| || | Sbjct 2299 TCCGCGGGCTCTGGTTGTGGTCCGGGAACGGGATGATGCTCGCGCAGATGCCCAGGATCA 2240 Query 1601448 GCAGCGGGTGGACCTCGACGTGCGTAAA---GGGCTCGCGGTCAACGG-GC---GCGCCG 1601500 |||||||| |||| |||||| | | || ||||| ||||| || | ||| Sbjct 2239 TGCTCGGGTGGATCTCGCAGTGCGTCCACCGGTGCGCGCGG--AACGGCGCCTTGATCCG 2182 Query 1601501 --TCGCTGGGTCGGAGGCCCGGTCG 1601523 |||| |||||| || ||| |||| Sbjct 2181 CTTCGCGGGGTCGAAGTCCCCGTCG 2157 >seq4264 Length=4713 Score = 154 bits (170), Expect = 2e-31 Identities = 192/263 (73%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 259923 CGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGG 259982 |||| |||||||| || |||||||| || | ||| |||| ||||| ||| | Sbjct 3248 CGCCGACGCTCTTCAACGCCGGCACAGTGCACAACCAGCTCGCGTCCTGCTTCCTGGTCT 3189 Query 259983 ACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCT 260042 ||||||| ||| ||||||||||||||||| || ||||||||| | || ||| | |||| Sbjct 3188 GTATGAAGGACGACTCGATCGAGGGCATCTACGAGACGCTCAAGAACTGTGCGATGATCT 3129 Query 260043 CCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACG 260102 | ||| |||| ||||||||||| | | ||||| | || || | || | ||| Sbjct 3128 CGAAGACGGCGGGCGGCATCGGCCTCAACATCCACAACATTCGTGCGACCGGGTCGTACA 3069 Query 260103 TGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACA 260162 | || || || |||||| ||| ||||| | |||||||||||||||| || ||| | Sbjct 3068 TTGCCGGTACGAACGGCATGTCGAACGGTATCGTGCCCATGCTTCGCGCCTTCGACGCGA 3009 Query 260163 CGGCGCGCTACGTCGACCAGTGC 260185 |||| |||||||| |||||| || Sbjct 3008 CGGCCCGCTACGTTGACCAGGGC 2986 >seq240 Length=16179 Score = 96.9 bits (106), Expect = 5e-14 Identities = 258/384 (67%), Gaps = 18/384 (5%) Strand=Plus/Plus Query 1816024 GCGCTCAATGTAGGTGGCGTCGGCGCCGTCGCCGCCATATGCAAACTGGACAATGTCGCC 1816083 |||||| ||| | | | | || |||||| |||| || | ||||| || | ||||| Sbjct 11845 GCGCTCGATGAACGCGCCATCCATGCCGTCCTCGCCGTACACGAACTGCACGAGATCGCC 11904 Query 1816084 GTTGGCGTTGCGCACGAGGCCGCCGCGCTTGATCTGCAGGCTCTCCATCGACTTGATGCA 1816143 | | |||||| || ||| || | || | | | ||| | || ||||| | Sbjct 11905 GAGCGAGTTGCGGACCGTGCCATCGTAGTGGACCATGACGTCCTCGAGCGCCTTGACGAG 11964 Query 1816144 CCGGCGCTGGATGTAGCCACGTC-CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGC 1816202 || ||||||||||| || |||| |||| |||||||| |||||||||| || ||||||| Sbjct 11965 TCGACGCTGGATGTAACC-CGTCTCGGCCGTCTTGACAGCCGTGTCGATGAGACCCTCGC 12023 Query 1816203 GGCCGCCGATCATGTGCAAAAACATCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGC 1816262 | ||| | || ||| || || | |||| ||| |||| |||||| ||||||||| Sbjct 12024 GACCGGCCATGGCGTGGAAGAAGAACTCGTGCGGAGTGAGCCCGCGCAGGTACGAGTTCT 12083 Query 1816263 GCACAAAGCCGCGGCTCTCGGGCGGCGGCA--CGGCC---TCGGCGTGCCGGTAGCAGCC 1816317 || || || || ||||| ||| | || || | | ||| || ||| | Sbjct 12084 CGACGAATCCACGAGACTCGG--GGCCAAAGTCGTCCTTGTTGAAGTG-GGGGAGC-GAG 12139 Query 1816318 CAGTGTGCGCGAACCCGACTCGGAGTGGATGCGCTGGCCCTCATTGCTCTGCTGGCCCAC 1816377 | ||| ||| ||| |||| | ||||||||| ||||||| | ||| ||||| || Sbjct 12140 CGGTG-GCG-GAAGCCGA-----ACGGGATGCGCTTGCCCTCAACGGACTGTTGGCCGAC 12192 Query 1816378 GCAGCCGCACATCTGGGTGATGTT 1816401 ||| || ||||||| | |||||| Sbjct 12193 ACAGACGGACATCTGCGAGATGTT 12216 >seq1779 Length=5957 Score = 86.0 bits (94), Expect = 9e-11 Identities = 108/144 (75%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC--AACCCGTTCCC 1456695 || ||| |||| || ||||| || |||||||||| ||| | ||||||||| Sbjct 11 CCCCCTACTCGTCGCCCTCGGTGGCTC-GAAGCACTACA--ACGTCACAAACCCGTTCGA 67 Query 1456696 ATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GA 1456754 | ||||| ||||||| ||| |||||||||||||||| |||||| || ||||| || Sbjct 68 CTTCATGGACATGATCTCACTCCAGGGCAAGACCAACTTCTTCGAGAAGCGGGTGGCTGA 127 Query 1456755 GTACGCCAAGGCCGGCGTCACCGC 1456778 |||| ||||||| ||||| |||| Sbjct 128 GTACTCCAAGGCTGGCGTGGCCGC 151 >seq723 Length=51713 Score = 86.0 bits (94), Expect = 9e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 262420 CAACCTCAATCGTGTGATTGACATTAATCACTACCCGGTGCCCGAGGCCCGCCACTCGAA 262479 |||||| ||| | |||||||| || ||||||| | |||||||| || |||||| Sbjct 49273 CAACCTTGGTCGGATCATTGACATCAACTACTACCCCCTACCCGAGGCTCGTGTCTCGAA 49214 Query 262480 TCTGCGCCATCGACCGATGGGCGTCGGCGTGCAGGGCCTCGCCGACG 262526 || || ||||| || |||||||||||||||||||| || || |||| Sbjct 49213 CCTTCGTCATCGGCCAATGGGCGTCGGCGTGCAGGGTCTGGCGGACG 49167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176953839612018