Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq231 140 3e-28 seq230 132 5e-26 seq1375 116 4e-21 seq1288 107 2e-18 seq1287 107 2e-18 seq464 86.0 6e-12 >seq231 Length=27061 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 134506 CGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGA 134565 ||||||| ||||| || ||||| || || |||||||| || ||| | ||| |||| Sbjct 341 CGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGA 282 Query 134566 GCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAA 134625 |||| ||||| ||||| || | |||||||| |||||||| ||||| || || || || | Sbjct 281 GCTGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGA 222 Query 134626 TTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTAC 134685 | || ||||| ||| | ||||||||||| || || ||||| || ||||| || | Sbjct 221 TCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGC 162 Query 134686 CGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 |||| | || || ||||| |||||||| ||||| Sbjct 161 CGGTCAGCGTCTTCACGAAGATTTGCATGGTGTTT 127 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||||||||| ||||| ||||| || ||||||||||| | || | Sbjct 689 AGGCGCAGGACGAGGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTACGC 630 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGC 134610 ||| |||||||| ||||| || ||||| | |||||||| ||||| || |||| Sbjct 629 CCGTCCTCGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGGATGC 575 >seq230 Length=49901 Score = 132 bits (146), Expect = 5e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 134506 CGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGA 134565 ||||||| ||||| || ||||| || ||||||||||| || ||| | ||| |||| Sbjct 21872 CGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGA 21813 Query 134566 GCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAA 134625 |||| ||||| ||||| || | |||||||| || ||||| ||||| || || || |||| Sbjct 21812 GCTGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAA 21753 Query 134626 TTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTAC 134685 | || ||||| ||| | |||||| ||| || || ||||| || ||||| || | Sbjct 21752 TCTTGGCCTTGACGTTGTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGC 21693 Query 134686 CGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||| | || || ||||| |||||||| Sbjct 21692 CGGTCAGCGTCTTCACGAAGATTTGCAT 21665 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||| || ||||||||||| || |||| | ||| ||| Sbjct 22718 ACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 22659 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || || | |||||||| || ||||| ||||| || || || || Sbjct 22658 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGG 22599 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||| || || || || ||||| || || || || Sbjct 22598 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTG 22539 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || ||||| Sbjct 22538 CCCGTCAACGTCTTGACGAAGATCTGCAT 22510 >seq1375 Length=30983 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || || || ||||| ||||||||||| || | Sbjct 15477 CCACCACGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCCGAA 15536 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || |||||||| ||||| || || |||||||||||||| || ||||| Sbjct 15537 AGAGTGCGACCATCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGCGGG 15596 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| || || || || || || ||| | ||||| || || || || Sbjct 15597 ATACCCTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCCGAGGACTCGACT 15656 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||| || ||||| | || || ||||| || ||||| Sbjct 15657 TCCAACGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 15703 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || ||||| ||||| |||||||||||||| | Sbjct 15705 CCGCCGCGGAGACGGAGGACGAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAA 15764 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| || || || || || | ||||||||| ||||| || Sbjct 15765 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGG 15824 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | |||||| ||| || || Sbjct 15825 ATGCCCTCCTTATCCTGGATCTTCGCCTTGACATTGTCGATAGTGTCGCTCGACTCGACC 15884 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || | || || ||||| || ||||| Sbjct 15885 TCAAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 15931 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| ||||| || ||||| || |||||||||||| | || | Sbjct 15942 AGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGG 16001 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGC 134610 || |||||||| ||||| || || |||| |||||||| |||||||| |||| Sbjct 16002 CCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGC 16056 >seq1288 Length=8444 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || |||| |||||||| ||||| || |||||||| ||||||||||||| Sbjct 547 CCTCCGCGCAGGCGCAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCGCTG 488 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| ||||| || || |||| |||||||| |||||||| Sbjct 487 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 428 Query 134607 ATGC 134610 |||| Sbjct 427 ATGC 424 >seq1287 Length=7882 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || |||| |||||||| ||||| || |||||||| ||||||||||||| Sbjct 548 CCTCCGCGCAGGCGCAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCGCTG 489 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| ||||| || || |||| |||||||| |||||||| Sbjct 488 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 429 Query 134607 ATGC 134610 |||| Sbjct 428 ATGC 425 >seq464 Length=19301 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||||||||| || || || ||||| || |||||||||||| || ||| | ||| || Sbjct 3602 CACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTC 3661 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGC 134610 |||||| ||||| || || || | |||||||| |||||||| |||| Sbjct 3662 GAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGC 3708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505342243920280