Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq523 96.9 5e-15 seq522 96.9 5e-15 >seq523 Length=1154 Score = 96.9 bits (106), Expect = 5e-15 Identities = 357/558 (64%), Gaps = 6/558 (1%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| || | |||||| || | || | ||||| || || ||||| Sbjct 861 GCAGGCAAAGTCCGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAG 802 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| || || ||||| |||||||| || |||| || || || || || ||||| Sbjct 801 GCCGGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAGCCCGAGAAGAA 742 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCG---TAACTTGTATCATTATG 39792 |||||| || || || || || ||||| || | ||| ||| | || || | | Sbjct 741 GATGCCCTCGACGGCGGCGAACGCAACGAGGCGCTCGCCGAACGAGCTCTGCTCGTCGTT 682 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 |||||| | | ||||| ||||| || ||| || || || || || || || |||| Sbjct 681 GATCCACGTGAGCGCCCACTCAGCCTTGCGCTTCACGCAGGGGATGGTCTCGATCGCATC 622 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 ||||| | | | | || |||| ||||| || || | || || | Sbjct 621 GAAGAGGAACTCGCGCTGCGCCGGCTCCTTAATGTATGTGTCGATGAGGAGCGAGTAGGT 562 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || || |||||||| || ||| ||||| || ||||| || || | ||||||| || Sbjct 561 CTCAGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCAGCGCGCTTCAGCGAT 502 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 || ||||| | || | ||| || || || || || || || || || || Sbjct 501 CTGCACCTCACCCGAGAAGCGTTCGAGCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGC 442 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCCA 40089 || || || | || || || || | || | | ||| || |||| Sbjct 441 GAAGAAGGCGAGGACGTGCGAGATGAAGTGACGCTCGTTGTCGTTCAGGCGGTTGCTCCA 382 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 ||| | ||| || || || | || | || || || ||||| ||||| ||||| ||||| Sbjct 381 GTCGTGGATGTCCTTGGACAGGTCCATCTCCTCGGCAGTCCAGAACGAGGCCTCAGCCTT 322 Query 40150 TTTGTACATGTTCCATAT 40167 |||||||| | |||||| Sbjct 321 CTTGTACATCTGCCATAT 304 >seq522 Length=1154 Score = 96.9 bits (106), Expect = 5e-15 Identities = 357/558 (64%), Gaps = 6/558 (1%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| || | |||||| || | || | ||||| || || ||||| Sbjct 861 GCAGGCAAAGTCCGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAG 802 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| || || ||||| |||||||| || |||| || || || || || ||||| Sbjct 801 GCCGGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCCGAGAAGAA 742 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCG---TAACTTGTATCATTATG 39792 |||||| || || || || || ||||| || | ||| ||| | || || | | Sbjct 741 GATGCCCTCGACGGCGGCGAACGCAACGAGGCGCTCGCCGAACGAGCTCTGCTCGTCGTT 682 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 |||||| | | ||||| ||||| || ||| || || || || || || || |||| Sbjct 681 GATCCACGTGAGCGCCCACTCAGCCTTGCGCTTCACGCAGGGGATGGTCTCGATCGCATC 622 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 ||||| | | | | || |||| ||||| || || | || || | Sbjct 621 GAAGAGGAACTCGCGCTGCGCCGGCTCCTTAATGTATGTGTCGATGAGGAGCGAGTAGGT 562 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || || |||||||| || ||| ||||| || ||||| || || | ||||||| || Sbjct 561 CTCAGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCAGCGCGCTTCAGCGAT 502 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 || ||||| | || | ||| || || || || || || || || || || Sbjct 501 CTGCACCTCGCCCGAGAAGCGTTCGAGCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGC 442 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCCA 40089 || || || | || || || || | || | | ||| || |||| Sbjct 441 GAAGAAGGCAAGGACGTGCGAGATGAAGTGACGCTCGTTGTCGTTCAGGCGGTTGCTCCA 382 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 ||| | ||| || || || | || | || || || ||||| ||||| ||||| ||||| Sbjct 381 GTCGTGGATGTCCTTGGACAGGTCCATCTCCTCGGCAGTCCAGAACGAGGCCTCAGCCTT 322 Query 40150 TTTGTACATGTTCCATAT 40167 |||||||| | |||||| Sbjct 321 CTTGTACATCTGCCATAT 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686832475845960