Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq4264 84.2 7e-11 seq522 84.2 7e-11 >seq4264 Length=4713 Score = 84.2 bits (92), Expect = 7e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| ||||| ||| | ||| || |||||||||||||||||||| || ||||| ||| Sbjct 1533 CACTTCTACGGCTGGAAGAGCGGGCTCAAGACGGGCATGTACTACCTCCGTACCCGCCCA 1474 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || || || ||||||| |||||||| Sbjct 1473 GCCGCGAACGCGATCCAGTTCACCGT 1448 >seq522 Length=1154 Score = 84.2 bits (92), Expect = 7e-11 Identities = 123/173 (71%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 443700 TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTT 443759 |||| |||||| || || || || || | ||||| || | || || ||| | || Sbjct 700 TTCGGCGAGCGCCTCGTTGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCT-CGTT 758 Query 443760 AGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGA 443819 ||||||||||||||| | || ||||| ||||| |||| ||| || ||||| ||||| Sbjct 759 CGCCTCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCACCTTCTCCAACGA 818 Query 443820 ACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACA 443872 || ||| || |||||||| |||| ||||| ||||| || |||| || Sbjct 819 GCTCATCTCGCGCGACGAGGGCATGCACACGGACTTTGCCTGCCTCCTCTTCA 871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588155103916605