Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq523 93.3 5e-14 seq522 93.3 5e-14 seq473 91.5 2e-13 >seq523 Length=1154 Score = 93.3 bits (102), Expect = 5e-14 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| ||| ||| | ||||| || || || || || || || |||||| || || Sbjct 858 GGCAAAGTCCGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCC 799 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 122776 |||||||| || |||||||| | ||| | || | ||| ||| || || |||||||||| Sbjct 798 GGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGACGC-GAACGAGCCCGAGAAGAAGA 740 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGC 122821 | ||||| || || ||||||| ||||| ||| |||| |||| Sbjct 739 TGCCCTCGACGGCGGCGAACGCAACGAGGCGCTCGCCGAACGAGC 695 >seq522 Length=1154 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| ||| ||| | ||||| || || || || || || || |||||| || || Sbjct 858 GGCAAAGTCCGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCC 799 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 |||||||| || |||||||| | ||| | || | | ||| || || ||||||||||| Sbjct 798 GGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCCGAGAAGAAGAT 739 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGC 122821 ||||| || || ||||||| ||||| ||| |||| |||| Sbjct 738 GCCCTCGACGGCGGCGAACGCAACGAGGCGCTCGCCGAACGAGC 695 >seq473 Length=15333 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 182697 TTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACC 182756 || || || ||||||||||| ||| ||| || ||||| ||||| ||| || |||| | Sbjct 3179 TTGCCACGCAGTGGGAACACGCCGAAGTTGTCGCGACCGACGACGCCGAGTCCGGCAATC 3238 Query 182757 GCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACA--CTTTCCAGATTGTG 182814 || || || || |||||||||||||| || | ||||| || || ||||| | | || Sbjct 3239 GCAAGCGTCTTGGCCGAATCACCCTCGGTTAGGATGAGCGTGCAGTCTTTCGCGTTCTTG 3298 Query 182815 CCGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACCG 182855 | | || || ||||||||||| || ||||||| |||| Sbjct 3299 C--TCCCTGCGTTGTTCGCGTCCGACAGTTTGGGAAGACCG 3337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627962217794400