Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq523 131 2e-25 seq522 125 9e-24 seq473 114 2e-20 >seq523 Length=1154 Score = 131 bits (144), Expect = 2e-25 Identities = 345/521 (66%), Gaps = 7/521 (1%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| ||| ||| | |||||||| || |||||||| || || |||||| || || Sbjct 858 GGCAAAGTCCGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCC 799 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| || |||||||| | |||||| || | || ||||| ||||||||||| Sbjct 798 GGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAGCCCGAGAAGAAGAT 739 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 ||||| || |||||||||| ||| ||||| | || |||| || | | Sbjct 738 GCCCTCGACGGCGGCGAACGCAACGAGGCGCTCGCCGAACGAGCTCTGCTCGTCGTTGAT 679 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 |||| | | |||||||| ||||| || | || |||| ||||| |||||| || || Sbjct 678 CCACGTGAGCGCCCACTCAGCCTTGCGCTTCACGCAGGGGATGGTCTCGATCGCATCGAA 619 Query 130255 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTC 130314 ||| || | | || || || ||||| | || ||||| || || || || Sbjct 618 GAGGAACTCGCGCTGCGCCGGCTCCTTAATGTATGTGTCGATGAGGAGCGAGTAGGTCTC 559 Query 130315 GCCATGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCT 130373 |||| | | ||| || ||| | ||||||| |||||||||| |||| Sbjct 558 AGAGTGGATGTTCTCCATCAT-AATCTGGAAGCCGTAGAAGCAGCGCGCTTCAGCGATCT 500 Query 130374 GTACCTCATCTGCAAAATTGTTATTG-ATATTCTCAAAAACAATTCCATCGGACCCAGCA 130432 | |||||| | | | || ||| | | ||||| || || || || || |||| Sbjct 499 GCACCTCACCCG-AGAAGCGTTCGAGCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGCG 441 Query 130433 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAG 130489 || || || |||| | | ||||| | | || || ||||||| || | ||||| Sbjct 440 AAGAAGGCGAGGACGTGCGAGATGAAGTGACGCTCGTTGTCGTTCAGGCGGTTGCTCCAG 381 Query 130490 TCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||| | ||||| || || || | |||||| |||||||| Sbjct 380 TCGTGGATGTCCTTGGACAGGTCCATCTCCTCGGCAGTCCA 340 >seq522 Length=1154 Score = 125 bits (138), Expect = 9e-24 Identities = 344/521 (66%), Gaps = 7/521 (1%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| ||| ||| | |||||||| || |||||||| || || |||||| || || Sbjct 858 GGCAAAGTCCGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCC 799 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| || |||||||| | |||||| || | || ||||| ||||||||||| Sbjct 798 GGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCCGAGAAGAAGAT 739 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 ||||| || |||||||||| ||| ||||| | || |||| || | | Sbjct 738 GCCCTCGACGGCGGCGAACGCAACGAGGCGCTCGCCGAACGAGCTCTGCTCGTCGTTGAT 679 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 |||| | | |||||||| ||||| || | || |||| ||||| |||||| || || Sbjct 678 CCACGTGAGCGCCCACTCAGCCTTGCGCTTCACGCAGGGGATGGTCTCGATCGCATCGAA 619 Query 130255 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTC 130314 ||| || | | || || || ||||| | || ||||| || || || || Sbjct 618 GAGGAACTCGCGCTGCGCCGGCTCCTTAATGTATGTGTCGATGAGGAGCGAGTAGGTCTC 559 Query 130315 GCCATGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCT 130373 |||| | | ||| || ||| | ||||||| |||||||||| |||| Sbjct 558 AGAGTGGATGTTCTCCATCAT-AATCTGGAAGCCGTAGAAGCAGCGCGCTTCAGCGATCT 500 Query 130374 GTACCTCATCTGCAAAATTGTTATTG-ATATTCTCAAAAACAATTCCATCGGACCCAGCA 130432 | ||||| | | | || ||| | | ||||| || || || || || |||| Sbjct 499 GCACCTCGCCCG-AGAAGCGTTCGAGCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGCG 441 Query 130433 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAG 130489 || || || |||| | | ||||| | | || || ||||||| || | ||||| Sbjct 440 AAGAAGGCAAGGACGTGCGAGATGAAGTGACGCTCGTTGTCGTTCAGGCGGTTGCTCCAG 381 Query 130490 TCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||| | ||||| || || || | |||||| |||||||| Sbjct 380 TCGTGGATGTCCTTGGACAGGTCCATCTCCTCGGCAGTCCA 340 >seq473 Length=15333 Score = 114 bits (126), Expect = 2e-20 Identities = 265/382 (69%), Gaps = 28/382 (7%) Strand=Plus/Plus Query 179808 ATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACATCTTGA-TAATCCTTA 179865 ||||||||| ||||| || ||||||||||| ||||| ||| | | || || ||||| Sbjct 3031 ATCCGTCATGATCATGAGACGACCATAGCGCAAGCT-GGAGGTGT-TCGAGTACTCCTTG 3088 Query 179866 CCTTGTTGA--AGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTT-----TGATGT 179918 |||| | ||||||| ||||||||||| | | || ||||| ||| |||| | Sbjct 3089 --TTGTGCACGAGACCCATGATCTTCTTGATGTTCTGGATCTCTTCGTTCTTCATGATCT 3146 Query 179919 GAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACC 179978 | || || || || || || || || ||| ||||| || |||||||| || Sbjct 3147 G-GTCATGCT--TG--GCCTCGCGAACGTTGAGGAGCTTGCCACGCAGTGGGAACACGCC 3201 Query 179979 GTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACC 180038 | ||| || ||||| || || ||| || |||| || || ||||| || |||||||| Sbjct 3202 GAAGTTGTCGCGACCGACGACGCCGAGTCCGGCAATCGCAAGCGTCTTGGCCGAATCACC 3261 Query 180039 CTCCGTCACGATGAGCGTACA--CTTTCCAGATTGTGCCGTCCCTGCCTTGTTCGCGTCG 180096 ||| || | ||||||||| || ||||| | | ||| ||||||| ||||||||||| Sbjct 3262 CTCGGTTAGGATGAGCGTGCAGTCTTTCGCGTTCTTGC--TCCCTGCGTTGTTCGCGTCC 3319 Query 180097 TCCAACTTGGGAATACCAGTAATTTTG--GACTTACGAGCGCCATCTGTCTTCTTGAGTT 180154 || ||||||| ||| | | | | || | | ||| || |||||||||| | Sbjct 3320 GACAGTTTGGGAAGACCGCTCAGACGGGTGCGTTTC--GTGCCGTCCGTCTTCTTGATCT 3377 Query 180155 CCTTCATC-TCCTTGAACTTGG 180175 |||| ||| ||| |||||||| Sbjct 3378 CCTT-ATCGGCCTGGAACTTGG 3398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618366484118840