Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4264 246 3e-60 seq523 122 1e-22 seq522 122 1e-22 seq473 104 3e-17 >seq4264 Length=4713 Score = 246 bits (272), Expect = 3e-60 Identities = 360/504 (71%), Gaps = 4/504 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | || |||||||| || ||| ||||| ||||||||| Sbjct 3341 TCATGCGGGTCGCCGTCGGCATCCACGGCGAGGACATTGAGCGTGCGATTGAGACGTATC 3282 Query 53253 ACTTAATGAGCCAAAAGT-ACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 ||| ||| | || | |||| ||||||||| |||| || || |||||||| || || Sbjct 3281 ACTACATGT-CGAACCGCCACTTCACGCACGCCTCGCCGACGCTCTTCAACGCCGGCACA 3223 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 ||| ||| | || |||||||||||| |||||||| ||||||||||| ||| Sbjct 3222 GTGCACAACCAGCTCGCGTCCTGCTTCCTGGTCTGTATGAAGGACGACTCGATCGAGGGC 3163 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||||||||||||| | ||||| ||||| ||| | |||| || ||||| || Sbjct 3162 ATCTACGAGACGCTCAAGAACTGTGCGATGATCTCGAAGACGGCGGGCGGCATCGGCCTC 3103 Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 || | ||| | ||||||| ||| | || || ||||||||| | | | Sbjct 3102 AACATCCACAACATTCGTGCGACCGGGTCGTACATTGCCGGTACGAACGGCATGTCGAAC 3043 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || |||||||| ||||| |||| |||| || |||||||| ||||| ||||||| || Sbjct 3042 GGTATCGTGCCCATGCTTCGCGCCTTCGACGCGACGGCCCGCTACGTTGACCAGGGCGGC 2983 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 || || || | |||||||||||||| |||||||||||||||||| || | || Sbjct 2982 AACAAACGACCCGGTGCCTTCGCCATCTACCTTGAGCCGTGGCACGCCGACGTTTTTGAC 2923 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC-GTGACCTGTTTAC 53670 || || || || ||| ||| || || | ||||| || | |||| | ||||| || Sbjct 2922 TTCCTTGACCTCCGTAAGAACCACGGCAAGGAAGA-ATCCCGTGCCCGCGACCTCTTCTA 2864 Query 53671 AGCTCTGTGGATTCCGGACCTCTT 53694 || |||||||| ||||||||||| Sbjct 2863 TGCGCTGTGGATACCGGACCTCTT 2840 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| | | ||| ||| || |||||||| | |||||| | || | || | || Sbjct 1676 TCAAGGCGCTCTACAAGACCGTCTGGGAGATCTCGCAGAAGCGCGTGCTGGAGCTCGCTG 1617 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | || || || || | ||| |||||| ||||| || ||| | | || || || | Sbjct 1616 CGGACCGGGGCGCCTTCATTTGCCAGTCGCAGTCCCTCAACGTGCACCTGCAGTCGCCGT 1557 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 || | | | || | | | |||||||| ||||| ||||||| || ||||||||||| | Sbjct 1556 CAATCGGCCAGCTCACCAGCATGCACTTCTACGGCTGGAAGAGCGGGCTCAAGACGGGCA 1497 Query 55908 TGTACTATCTGCGGACCCGC 55927 ||||||| || || |||||| Sbjct 1496 TGTACTACCTCCGTACCCGC 1477 >seq523 Length=1154 Score = 122 bits (134), Expect = 1e-22 Identities = 316/473 (67%), Gaps = 18/473 (4%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| ||||| |||||||| | ||| ||||||| ||| || || |||| Sbjct 803 AGGCCGGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAGCCCGAGAAG 744 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACG----GTGCATCGGA 74920 |||||||| ||||| || || || || ||||| | |||||| ||| ||| Sbjct 743 AAGATGCCCTCGACGGCGGCGAACGCAACGAGGCGCTCGCCGAACGAGCTCTGC-TCGTC 685 Query 74921 AGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCG 74979 | ||||| || | ||||| ||||| || || || | |||| |||| || ||||||| Sbjct 684 GTTGATCCACGTGAGCGCCCACTCAGCCTTGCGCTTCA-CGCAGGGGATGGTCTCGATCG 626 Query 74980 CTTGGAAGAGG--CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGA 75037 | | ||||||| || || || | || ||||| | | |||| || | || || Sbjct 625 CATCGAAGAGGAACTCGC--GCTGCGCCGGCTCCTTAATGTATGTGTCGATGAGGAGCGA 568 Query 75038 GTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTC 75097 ||| ||||| || || || ||| | | |||| | ||||||| | ||||| || Sbjct 567 GTAGGTCTCAGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCAGCGCGCTTC 508 Query 75098 TGCAATCTGTACAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCC 75155 || ||||| || | || ||| ||| | | ||||| |||||||||||||| Sbjct 507 AGCGATCTGCACCTCACCCGAGAAGCGTTC--GAGCAGGTTCTCGTTGACGATGCCGTCC 450 Query 75156 GAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGT---GAGT 75212 ||||| ||||| || || || || ||| ||||| ||||| | ||| | | | Sbjct 449 GAGGCAGCGAAGAAGGCGAGGACGTGCGAGATGAAGTGACGCTCGTTGTCGTTCAGGCGG 390 Query 75213 TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 ||| ||| || | | |||| | || || ||||||||| | |||||||| Sbjct 389 TTGCTCCAGTCGTGGATGTCCTTGGACAGGTCCATCTCCTCGGCAGTCCAGAA 337 >seq522 Length=1154 Score = 122 bits (134), Expect = 1e-22 Identities = 316/473 (67%), Gaps = 18/473 (4%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| ||||| |||||||| | ||| ||||||| ||| || || |||| Sbjct 803 AGGCCGGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCCGAGAAG 744 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACG----GTGCATCGGA 74920 |||||||| ||||| || || || || ||||| | |||||| ||| ||| Sbjct 743 AAGATGCCCTCGACGGCGGCGAACGCAACGAGGCGCTCGCCGAACGAGCTCTGC-TCGTC 685 Query 74921 AGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCG 74979 | ||||| || | ||||| ||||| || || || | |||| |||| || ||||||| Sbjct 684 GTTGATCCACGTGAGCGCCCACTCAGCCTTGCGCTTCA-CGCAGGGGATGGTCTCGATCG 626 Query 74980 CTTGGAAGAGG--CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGA 75037 | | ||||||| || || || | || ||||| | | |||| || | || || Sbjct 625 CATCGAAGAGGAACTCGC--GCTGCGCCGGCTCCTTAATGTATGTGTCGATGAGGAGCGA 568 Query 75038 GTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTC 75097 ||| ||||| || || || ||| | | |||| | ||||||| | ||||| || Sbjct 567 GTAGGTCTCAGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCAGCGCGCTTC 508 Query 75098 TGCAATCTGTACAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCC 75155 || ||||| || | || ||| ||| | | ||||| |||||||||||||| Sbjct 507 AGCGATCTGCACCTCGCCCGAGAAGCGTTC--GAGCAGGTTCTCGTTGACGATGCCGTCC 450 Query 75156 GAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGT---GAGT 75212 ||||| ||||| || || || || ||| ||||| ||||| | ||| | | | Sbjct 449 GAGGCAGCGAAGAAGGCAAGGACGTGCGAGATGAAGTGACGCTCGTTGTCGTTCAGGCGG 390 Query 75213 TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 ||| ||| || | | |||| | || || ||||||||| | |||||||| Sbjct 389 TTGCTCCAGTCGTGGATGTCCTTGGACAGGTCCATCTCCTCGGCAGTCCAGAA 337 >seq473 Length=15333 Score = 104 bits (114), Expect = 3e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 118170 TGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGC 118229 |||| || ||||||||| | |||| || |||||||| |||||||| || ||||| || | Sbjct 3156 TGGCCTCGCGAACGTTGAGGAGCTTGCCACGCAGTGGGAACACGCCGAAGTTGTCGCGAC 3215 Query 118230 CCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAA 118289 | || |||| | |||||||| ||||| | ||| ||||| ||||||||||| | || | Sbjct 3216 CGACGACGCCGAGTCCGGCAATCGCAAGCGTCTTGGCCGAATCACCCTCGGTTAGGATGA 3275 Query 118290 GAGTGCACTC 118299 | ||||| || Sbjct 3276 GCGTGCAGTC 3285 Score = 96.9 bits (106), Expect = 4e-15 Identities = 176/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 152812 TCGGTCATGATCATCAGACGACCGTAGCGCAGGTCACGTAGTGACCC-GTAGACCTTTCC 152870 || ||||||||||| |||||||| ||||||| | | | ||| | ||| |||| Sbjct 3032 TCCGTCATGATCATGAGACGACCATAGCGCAAG-CTGGAGGTGTTCGAGTACTCCTTGTT 3090 Query 152871 ATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTT 152930 || || || | |||||| |||| ||| | || || || | | | ||| | Sbjct 3091 GTGCACGAGACCCATGATCTTCTTGATGTTCTGGATCTCTTCGTTCTTCATGATCTGGTC 3150 Query 152931 CACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTT 152990 | |||| || ||||| ||| | |||| || || ||||| ||||||||||| || Sbjct 3151 ATGCTTGGCCTCGCGAACGTTGAGGAGCTTGCCACGCAGTGGGAACACGCCGAAGTTGTC 3210 Query 152991 GCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGAT 153050 ||| || || |||| || |||||||| ||||| | || ||||| ||||||||||| | Sbjct 3211 GCGACCGACGACGCCGAGTCCGGCAATCGCAAGCGTCTTGGCCGAATCACCCTCGGTTAG 3270 Query 153051 AATAAGCGTACAGTC 153065 || ||||| ||||| Sbjct 3271 GATGAGCGTGCAGTC 3285 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| ||||| |||||||| ||||| ||||||||||||| || ||| ||||||| Sbjct 4208 GTTGGCGAGCTTTGCACCGTAACCGTTACGACCACCGGTCAGCTTCTTCTCGTCGTCGTC 4267 Query 119143 GTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 |||||| ||| | | |||||| || ||||| | ||| ||||| Sbjct 4268 GTAGTTAGAGGACGAGAGAAGGTGACCGAAGATCATCTCTGGGAT 4312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547155197462200