Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq230 93.3 3e-14 seq231 87.8 1e-12 >seq230 Length=49901 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | || ||||| |||||| || ||||| || || || Sbjct 22737 GCCGCCGCGCAGACGGAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 22678 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || |||| || || || || ||||| || || | ||||| ||||| ||||| Sbjct 22677 AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGG 22618 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| | ||| | Sbjct 22617 GATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGA 22559 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | || ||||| || || || ||||| || || || ||||||||| Sbjct 22558 CCTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTGACGAAGATCTGCATG 22509 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || |||||| || ||||| || || ||||| || || |||| || || || Sbjct 21867 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGC 21808 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || ||||| || | ||||| ||||| ||||| | ||||||||||| ||| || Sbjct 21807 TTGCCCGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTC-CTGAATCTT 21749 Query 34624 TGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | || ||| | || ||||| ||| ||| || || | ||| || || || |||| Sbjct 21748 GGCCTTGACGTTGTCGATCGTGTCGCTCG-ACTCGACCTCGAGGGTGATGGTCTTGCCGG 21690 Query 34682 TTAACGTTTTCACAAAAATCTGCATGTTGATTG 34714 | | ||| ||||| || || |||||| || ||| Sbjct 21689 TCAGCGTCTTCACGAAGATTTGCATGGTGGTTG 21657 >seq231 Length=27061 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || ||||| |||||| || ||||| ||||| ||||| || || | || || || || Sbjct 902 TGCAGAGTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCGAGCTGC 843 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| ||||| ||||| | ||||||||||| |||| || Sbjct 842 TTTCCGGCGAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATC-TT 784 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || || | || ||||| | ||| || |||| || ||||| || || || Sbjct 783 CGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGT 724 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 || || || || || ||||||||| Sbjct 723 CAATGTCTTGACGAAGATCTGCATG 699 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || |||||| || || || || || ||||| || || |||| || || || Sbjct 336 TGGAGCGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGC 277 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || ||||| || | ||||| ||||| ||||| | ||||||||||| |||| || Sbjct 276 TTGCCCGCAAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATC-TT 218 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | || ||||| ||| || || | ||| || || || ||||| Sbjct 217 CGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 158 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTGATTG 34714 | ||| ||||| || || |||||| || ||| Sbjct 157 CAGCGTCTTCACGAAGATTTGCATGGTGTTTG 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314695503867137