Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq973 98.7 9e-16 >seq973 Length=1292 Score = 98.7 bits (108), Expect = 9e-16 Identities = 229/340 (67%), Gaps = 4/340 (1%) Strand=Plus/Plus Query 6785 GGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT- 6843 ||||||||||| ||| | ||||| | || ||||| |||| | | ||||| Sbjct 360 GGGTTCCACGCAGACAAGATAATCCTCCGATCCGTCGGGTTGTGCTTGATCTTCTCGATG 419 Query 6844 CACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC-TTCGCTCCCCCGATACT 6902 ||| | || ||| |||||| | || | |||| |||||| || | ||| | || |||| Sbjct 420 CAC-TCCTTCAGTTGGTCCACGCCTTTGCCCGTATAGTCTGCGTCCGCATCGACG-TACT 477 Query 6903 CCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAG 6962 | ||||| ||||||| ||||||||| || |||||||| || | ||||| ||| ||| Sbjct 478 CAGCCCCGAAGTGTCGCCACTGGAAGCCATAGACCGGCCCGAGATCGCCTTCCCGTCGAT 537 Query 6963 ATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCC 7022 | || || ||| ||| |||||| | || || || | |||||||||| || | Sbjct 538 GCGAGAGGCCGCGCGAGTCGAGAAAGGCGCGCGAGCCATTGCCGTCCCAGATGCGGACGC 597 Query 7023 CCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGA 7082 || | | |||||| | | || || || || | | |||||| || ||||| | | Sbjct 598 CCTGAGCGGAGAGCAAGGTCGAGTCTGTTGCGCCACGGATGAACCAGAGAAGCTCGGCCA 657 Query 7083 CCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 | ||||||| | || || ||||| |||| ||| || Sbjct 658 GGATGCCCTTCAGGAACGTCCGCTTCGTGGTCAACAGTGG 697 Score = 98.7 bits (108), Expect = 9e-16 Identities = 229/340 (67%), Gaps = 4/340 (1%) Strand=Plus/Minus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 || ||| |||| ||||| || || | ||||||| | | | ||||| || |||||| Sbjct 697 CCACTGTTGACCACGAAGCGGACGTTCCTGAAGGGCATCCTGGCCGAGCTTCTCTGGTTC 638 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 | | || || || || | | |||||| | | ||| || |||||||||| Sbjct 637 ATCCGTGGCGCAACAGACTCGACCTTGCTCTCCGCTCAGGGCGTCCGCATCTGGGACGGC 578 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402 | || || || | |||||| ||| ||| || || | ||| ||| ||||| | Sbjct 577 AATGGCTCGCGCGCCTTTCTCGACTCGCGCGGCCTCTCGCATCGACGGGAAGGCGATCTC 518 Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA-GC 34461 || |||||||| || ||||||||| ||||||| ||||| ||||| || | ||| | || Sbjct 517 GGGCCGGTCTATGGCTTCCAGTGGCGACACTTCGGGGCTGAGTA-CGTCGATGCGGACGC 459 Query 34462 GGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTG-ATCGACACCTTGAAGCGGA 34520 |||||| |||| | || | |||||| ||| || | ||| ||||| | | |||| | Sbjct 458 AGACTATACGGGCAAAGGCGTGGACCAACTGAAGGA-GTGCATCGAGAAGATCAAGCACA 400 Query 34521 ACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCC 34560 |||| || | ||||| | ||| ||||||||||| Sbjct 399 ACCCGACGGATCGGAGGATTATCTTGTCTGCGTGGAACCC 360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448212592444080