Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq230 185 2e-41 seq231 176 1e-38 seq1375 158 3e-33 seq464 98.7 2e-15 seq1288 89.7 1e-12 seq1287 89.7 1e-12 >seq230 Length=49901 Score = 185 bits (204), Expect = 2e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||| ||||| || |||||||| || |||| |||||| | || || Sbjct 22721 AGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 22662 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 22661 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 22602 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| ||| || |||||||| ||||||||| Sbjct 22601 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTC 22542 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | |||||| Sbjct 22541 TTGCCCGTCAACGTCTTGACGAAGATCTGCAT 22510 Score = 143 bits (158), Expect = 6e-29 Identities = 158/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 ||||| || || ||||| || |||||||| || |||| |||||| | || || || ||| Sbjct 21870 AGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGC 21811 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 |||||||| || ||||||||||| || ||||| || || | || ||||||||||| ||| Sbjct 21810 TGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATC 21751 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTT 211085 || || ||||| ||||| ||||| ||| || |||||||| ||||| ||||| Sbjct 21750 TTGGCCTTGACGTTGTCGATCGTGTC---GCTCGACTCGACCTCGAGGGTGATGGTCTTG 21694 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| || || | ||||| Sbjct 21693 CCGGTCAGCGTCTTCACGAAGATTTGCAT 21665 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| ||||| |||||||| ||||||||||| ||| || |||||| Sbjct 22049 CCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCG 21990 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| || || | |||||| Sbjct 21989 AGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 21946 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| ||||| || |||||||| || |||| |||||| | || || Sbjct 22211 AGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 22152 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || ||||||||||| |||||||| ||||| || ||||| ||||| Sbjct 22151 TCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGAGG 22108 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| ||||| |||||||| ||||||||||| ||| || |||||| Sbjct 22331 CCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCG 22272 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| || || | |||||| Sbjct 22271 AGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 22228 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || || | || || | || || Sbjct 22493 AGGACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTACGCCCGTCC 22434 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || ||||||||||| |||||||| ||||| || ||||| ||||| Sbjct 22433 TCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGAGG 22390 >seq231 Length=27061 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||| ||||| || |||||||| ||||||| |||||| | ||||| Sbjct 911 AGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCC 852 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || ||||| || || | || ||||||||| Sbjct 851 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 792 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||| ||||| ||| || ||||| || ||||||||| Sbjct 791 TGGATCTTCGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTC 732 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | |||||| Sbjct 731 TTGCCCGTCAATGTCTTGACGAAGATCTGCAT 700 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 ||||| || || ||||| || ||||| || || |||| ||| || | || || || ||| Sbjct 339 AGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGC 280 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 |||||||| || ||||||||||| || ||||| || || | || ||||||||||||||| Sbjct 279 TGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATC 220 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || ||||| ||||||||||| || || |||||||| ||||| ||||| || Sbjct 219 TTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCG 160 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || | ||||| Sbjct 159 GTCAGCGTCTTCACGAAGATTTGCAT 134 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || |||| || || | || || Sbjct 683 AGGACGAGGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTACGCCCGTCC 624 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || ||||||||||| ||||| || ||||| || ||||| ||||| Sbjct 623 TCGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGG 580 >seq1375 Length=30983 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| ||||| || || ||||| ||||||| ||| || | ||||| Sbjct 15492 AGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCCGAAAGAGTGCGACCATCC 15551 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | || || ||||| || || | || || |||||| Sbjct 15552 TCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGCGGGATACCCTCTTTGTCC 15611 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || |||||||| ||| || || || | ||||| ||| Sbjct 15612 TGGATCTTCGCCTTCACGTTGTCAATGGTGTCCGAGGACTCGACTTCCAACGTGATGGTC 15671 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 15672 TTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 15703 Score = 150 bits (166), Expect = 4e-31 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || || ||||| || |||| ||| || | || || Sbjct 15720 AGGACGAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 15779 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || ||||| ||||| | || ||||| ||| Sbjct 15780 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCC 15839 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || || || ||||| ||||| ||| || ||||| || |||||| Sbjct 15840 TGGATCTTCGCCTTGACATTGTCGATAGTGTC---GCTCGACTCGACCTCAAGCGTGATC 15896 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||| || || | |||||| Sbjct 15897 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 15931 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || || || ||||||||||| ||| ||||||||| Sbjct 16109 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCG 16168 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| || || | ||||| Sbjct 16169 AGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCAT 16212 >seq464 Length=19301 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || ||||| ||||||||||| || || |||||| Sbjct 3772 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCG 3831 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||||||||| |||||||| ||||| || || | |||||| Sbjct 3832 AGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 3875 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| ||||| || |||||||| || || | ||| || | || || Sbjct 3600 AGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 3659 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || ||||||||||| |||||||| ||||| || ||||| || || Sbjct 3660 TCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGCGG 3703 >seq1288 Length=8444 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || || || ||||||||||| ||| || |||||| Sbjct 366 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCG 307 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| ||||| || ||||| || || | |||||| || Sbjct 306 AGGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCATCTT 260 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| ||||||||||| || || ||||| | || || Sbjct 532 AGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCC 473 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || ||||||||||| |||||||| ||||| || ||||| || || Sbjct 472 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGG 429 >seq1287 Length=7882 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || || || ||||||||||| ||| || |||||| Sbjct 366 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCG 307 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| ||||| || ||||| || || | |||||| || Sbjct 306 AGGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCATCTT 260 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| ||||||||||| || || ||||| | || || Sbjct 533 AGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCC 474 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || ||||||||||| |||||||| ||||| || ||||| || || Sbjct 473 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGG 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159019983816485