Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq231 158 3e-33 seq230 143 6e-29 seq1375 140 8e-28 seq61 96.9 8e-15 seq464 86.0 1e-11 >seq231 Length=27061 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| ||||| || || || |||| |||||||| | | || | ||||| Sbjct 911 AGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCC 852 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| ||||| || || |||||||| Sbjct 851 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 792 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||| ||||| |||| || || || | |||||||||| Sbjct 791 TGGATCTTCGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTC 732 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || || | ||| | ||||| Sbjct 731 TTGCCCGTCAATGTCTTGACGAAGATCTGCAT 700 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 |||||||| || || || || |||| |||||| || | | ||| | || || || ||| Sbjct 339 AGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGC 280 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || || |||||||| || || ||||||||||| || || |||||||| |||||| Sbjct 279 TGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATC 220 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || ||||||||||| || | || || || | ||||| |||||||| Sbjct 219 TTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCG 160 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 |||| || || | ||| | |||||| Sbjct 159 GTCAGCGTCTTCACGAAGATTTGCAT 134 >seq230 Length=49901 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| ||||| || || || |||| ||||| || | | || | || || Sbjct 22721 AGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 22662 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| ||||| || || |||||||| Sbjct 22661 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 22602 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| |||| || || || | |||||||||| Sbjct 22601 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTC 22542 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || || | ||| | ||||| Sbjct 22541 TTGCCCGTCAACGTCTTGACGAAGATCTGCAT 22510 >seq1375 Length=30983 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||||||||| || || || || | |||||||| | | ||| | ||||| Sbjct 15492 AGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCCGAAAGAGTGCGACCATCC 15551 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | || || ||||| ||||| ||||| || ||||| Sbjct 15552 TCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGCGGGATACCCTCTTTGTCC 15611 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || |||||||| |||| || || || |||||||| ||| Sbjct 15612 TGGATCTTCGCCTTCACGTTGTCAATGGTGTCCGAGGACTCGACTTCCAACGTGATGGTC 15671 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 15672 TTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 15703 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || || | ||||| || | | ||| | || || Sbjct 15720 AGGACGAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 15779 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || |||||||| || || || ||||| || Sbjct 15780 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCC 15839 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||| ||||| | || || || | |||||||||| Sbjct 15840 TGGATCTTCGCCTTGACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGCGTGATCGTC 15899 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | ||||| Sbjct 15900 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 15931 >seq61 Length=67409 Score = 96.9 bits (106), Expect = 8e-15 Identities = 202/300 (67%), Gaps = 6/300 (2%) Strand=Plus/Minus Query 7429 AAGGAACTGGAAACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATA 7488 |||||| | | || | |||||| | || | | ||| ||||||| || |||||| Sbjct 16667 AAGGAAATAGGTACTATGTATTTAGTCTTCGCAGTTTTTGCTGGTATGATTGGTACTGCT 16608 Query 7489 TTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAAT 7548 ||||| | | || || |||||||| |||| || || |||||||| || || Sbjct 16607 TTTTCAGTATTAATTAGACTAGAATTATCTGCACCAGGAGTACAAATATTACAAGGAGAT 16548 Query 7549 AGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTT 7608 | |||| | | || ||||| | || || || || || || ||||||||||| | ||| Sbjct 16547 AACCAATTATTTAATGTTATAGTAACTGCTCACGCATTCGTGATGATTTTCTTCATGGTT 16488 Query 7609 ATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCC---TTTAATGATTGGTGCT 7665 ||||| | | |||| || || ||||| | | | || |||| || || || Sbjct 16487 ATGCCAGCACTAGTAGGAGGATTTGGAAACTTCCTTTTACCAGTTTTAGTG---GGAGCA 16431 Query 7666 CCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 || |||||||| || ||||| || || || || ||||| |||||||| ||||| ||| Sbjct 16430 CCAGATATGGCCTTCCCAAGACTAAATAACATTTCATTTTGGTTACTACCTCCTTCATTA 16371 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||| || || |||||||||||||| | ||| || || || || |||| Sbjct 14867 TTCTGGGTGTCCAAAGAACCAAAATAAATGTTGATATAAGATTGGGTCACCACCTCCTGC 14926 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||| || |||| ||||||||||| |||||||| || || |||| Sbjct 14927 TGGGTCGTAAAAACTAGTATTAAAGTTTCTATCTGTCAATAACA 14970 >seq464 Length=19301 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||||||||| || || || |||| ||||| |||| | ||| | || || Sbjct 3600 AGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 3659 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 || |||||||| ||||||||||| || || || ||||||||||| || Sbjct 3660 TCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGCGGGAT 3706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192395382248966