Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07-
25] 8,889 sequences; 36,136,062 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq231 123 6e-23
seq1375 109 1e-18
seq230 109 1e-18
>seq231
Length=27061
Score = 123 bits (136), Expect = 6e-23
Identities = 157/214 (73%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|||||||| || ||||| ||||| || |||||||||||||| | | || | |||||
Sbjct 911 AGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCC 852
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| ||||||||||| || | ||||||||| | || ||| || ||||| |
Sbjct 851 TCGAGCTGCTTT--CCGGCGAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGT 794
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || || || |||||| | || | |||| || ||| || || || || || |
Sbjct 793 CCTGGATCTTCGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCG 734
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| |||||||| | ||||| ||||||| ||||||
Sbjct 733 TCTTGCCCGTCAATGTCTTGACGAAGATCTGCAT 700
Score = 93.3 bits (102), Expect = 1e-13
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958
|| || || || ||||| || ||||| ||||| || | | ||| | || || || ||
Sbjct 339 AGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGC 280
Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018
|| || || |||||||| | ||||||||| | || ||| || ||||| || || ||
Sbjct 279 TGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATC 220
Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078
|| ||||| | || | | |||| || ||| || || || || || || |||||
Sbjct 219 TTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCG 160
Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||||||||||| |||||
Sbjct 159 GTCAGCGTCTTCACGAAGATTTGCAT 134
>seq1375
Length=30983
Score = 109 bits (120), Expect = 1e-18
Identities = 158/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| || || || || ||||| || || |||||||| || | | ||| |
Sbjct 15713 GAGACGGAGGACGAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCG 15772
Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
|| || || || ||||| ||||||||||| || | ||||||||| | | ||| ||
Sbjct 15773 GCCGTCCTCGAGCTGCTTT--CCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCC 15830
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
||||| || || || || |||||| | || | |||| ||| || |||||
Sbjct 15831 TCCTTATCCTGGATCTTCGCCTTGACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGC 15890
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || ||||||||||| ||||| ||||||| ||||||
Sbjct 15891 GTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 15931
Score = 107 bits (118), Expect = 4e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| || || ||||| ||||| || || ||||||||||| | | ||| |
Sbjct 15485 GAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCCGAAAGAGTGCG 15544
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || || |||||||| | | ||||||||| | || ||| || ||
Sbjct 15545 ACCATCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGCGGGATACCCTC 15604
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
|| || || || || || || | || | | |||| || ||| ||||| | ||
Sbjct 15605 TTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCCGAGGACTCGACTTCCAACGT 15664
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||| ||||| ||||| ||||||| ||||||
Sbjct 15665 GATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 15703
>seq230
Length=49901
Score = 109 bits (120), Expect = 1e-18
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||||||||| || ||||| ||||| || ||||||||||| || | | || | || ||
Sbjct 22722 GAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTC 22663
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || ||||||||||| || | ||||||||| | || ||| || ||||| ||
Sbjct 22662 CTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTC 22603
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || ||||| | || | |||| || ||| || || || || || ||
Sbjct 22602 CTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGT 22543
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||||||| | ||||| ||||||| ||||||
Sbjct 22542 CTTGCCCGTCAACGTCTTGACGAAGATCTGCAT 22510
Score = 84.2 bits (92), Expect = 5e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958
|| || || || ||||| || ||||||||||| || | | || | || || || ||
Sbjct 21870 AGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGC 21811
Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018
|| || || |||||||| | ||||||||| | || ||| || ||||| || |||||
Sbjct 21810 TGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATC 21751
Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078
|| ||||| | || | |||| ||| || || || || || || |||||
Sbjct 21750 TTGGCCTTGACGTTGTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCG 21691
Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||||||||||| |||||
Sbjct 21690 GTCAGCGTCTTCACGAAGATTTGCAT 21665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153689390988519
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |