Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq231 185 2e-41 seq230 179 8e-40 seq1375 158 3e-33 seq464 107 4e-18 seq1288 98.7 2e-15 seq1287 98.7 2e-15 seq473 93.3 9e-14 >seq231 Length=27061 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| ||||| || || || | || || || ||||||||||| || | | Sbjct 926 CCACCGCGCAGACGAAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAATCCGAA 867 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || ||||| ||||| | ||| || ||||| ||| Sbjct 866 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGCGGG 807 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || || | ||||| |||||||| | ||||| Sbjct 806 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACC 747 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| |||||||| ||||| ||||| |||||||| Sbjct 746 TCCAGCGTGATCGTCTTGCCCGTCAATGTCTTGACGAAGATCTGCAT 700 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| |||||||| | ||| |||||||| ||||| || || || || |||||| Sbjct 324 TCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCAAAG 265 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || ||||| ||| || ||||||||||| |||||||| || || ||| | Sbjct 264 ATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTG 205 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | ||||| ||||| ||||| ||||| || |||| ||||| ||| Sbjct 204 TCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTCACG 145 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 144 AAGATTTGCAT 134 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| || ||||| || || ||| | ||||| ||||| | ||||| ||| Sbjct 521 CCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATGGTGTCGCTCGACTCGACCTCG 462 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| ||||||| ||||| ||||| || ||||| Sbjct 461 AGCGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 418 >seq230 Length=49901 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || ||||| || || || || || | || || || |||||||||||||| | | Sbjct 22736 CCGCCGCGCAGACGGAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 22677 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || ||||| ||||| | || || ||||| ||| Sbjct 22676 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGGG 22617 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| |||||||| | ||||| Sbjct 22616 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 22557 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| |||||||| ||||| ||||| |||||||| Sbjct 22556 TCGAGCGTGATCGTCTTGCCCGTCAACGTCTTGACGAAGATCTGCAT 22510 Score = 138 bits (152), Expect = 2e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||| || ||||| ||||| || || || || |||||| Sbjct 21855 TCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCAAAG 21796 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || ||||| ||| || ||||||||||| || ||||| || || ||| | Sbjct 21795 ATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 21736 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| | ||||| ||||| ||||| ||||| || |||| ||||| ||| Sbjct 21735 TCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTCACG 21676 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 21675 AAGATTTGCAT 21665 Score = 93.3 bits (102), Expect = 9e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| || ||||| || || ||| | ||||| |||||||| | || || ||| Sbjct 22049 CCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCG 21990 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 21989 AGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 21946 Score = 93.3 bits (102), Expect = 9e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| || ||||| || || ||| | ||||| |||||||| | || || ||| Sbjct 22331 CCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCG 22272 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 22271 AGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 22228 >seq1375 Length=30983 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || || || | || || || || |||||||| || | | Sbjct 15477 CCACCACGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCCGAA 15536 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || || || ||||||||||| || ||||| ||| Sbjct 15537 AGAGTGCGACCATCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGCGGG 15596 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||| ||||| |||||||| || || ||| | || || |||||||| | |||||| Sbjct 15597 ATACCCTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCCGAGGACTCGACT 15656 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 15657 TCCAACGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 15703 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || || || || || | ||| || || || ||||||||||| | Sbjct 15704 ACCGCCGCGGAGACGGAGGACGAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGA 15763 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || ||||| ||||| | ||| || ||||| || Sbjct 15764 AAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGG 15823 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || |||||||| || || || | ||||||||||| | ||||| Sbjct 15824 GATGCCCTCCTTATCCTGGATCTTCGCCTTGACATTGTCGATAGTGTCGCTCGACTCGAC 15883 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 15884 CTCAAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 15931 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || || | ||||| |||||||| | || || ||| Sbjct 16109 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCG 16168 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| ||||| | ||||| ||||| || ||||| Sbjct 16169 AGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCAT 16212 >seq464 Length=19301 Score = 107 bits (118), Expect = 4e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || ||| | ||||| |||||||||| || || ||| Sbjct 3772 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCG 3831 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 3832 AGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 3875 >seq1288 Length=8444 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || || | ||||| |||||||| | ||||| ||| Sbjct 366 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCG 307 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || ||||| ||||| ||||| | ||||| ||||| |||||||| || Sbjct 306 AGGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCATCTT 260 >seq1287 Length=7882 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || || | ||||| |||||||| | ||||| ||| Sbjct 366 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCG 307 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || ||||| ||||| ||||| | ||||| ||||| |||||||| || Sbjct 306 AGGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCATCTT 260 >seq473 Length=15333 Score = 93.3 bits (102), Expect = 9e-14 Identities = 130/182 (71%), Gaps = 8/182 (4%) Strand=Plus/Plus Query 273801 GCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTT 273860 || ||||| |||||||| || | || || |||| || | ||||| ||| |||| Sbjct 1996 GCGTGGTCTTTGCCACCCTGGTCACGCGTGCCGTACTGGCCGTTGGGCATAAGCAAGTTC 2055 Query 273861 ATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATAC- 273919 | ||||||||| |||||||| || || |||| || || |||||| || || || Sbjct 2056 AGGTTGTTGCTGCCGACGTAGTCTTGGGCCAAGTTGACAATAGTCAT----AGCGAGACT 2111 Query 273920 ---CTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTT 273976 ||||||||| || || ||| || |||||||| || ||| ||| ||||||||||| Sbjct 2112 CTGCTCGCCGTGATGGTACGCGGCTTGCTCGGCGATGTATCCAATGAGCTGAGCAACCTG 2171 Query 273977 CA 273978 || Sbjct 2172 CA 2173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046619986545406