Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq231 150 4e-31 seq230 147 5e-30 seq1375 134 3e-26 seq464 87.8 4e-12 >seq231 Length=27061 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || |||||||| || ||||| || ||| ||| Sbjct 703 CAGATCTTCGTCAAGACATTGACGGGCAAGACGATCACGCTGGAGGTCGAGTCCTCGGAC 762 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 763 ACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAGCAG 822 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| |||||||| ||||| | || ||| | ||||| ||| || Sbjct 823 CGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTTTCGGATTACAACATC 882 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| ||||| Sbjct 883 CAGAAGGAGTCGACTCTGCACCTTGT 908 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || || || || || |||||||||||||| || || ||| Sbjct 137 CAAATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGAC 196 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 197 ACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 256 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || |||||||| || || | |||||| | || || || || Sbjct 257 CGCCTTATCTTTGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAATATC 316 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || || || || || || || Sbjct 317 CAGAAGGAGTCGACGCTCCACCT 339 >seq230 Length=49901 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || |||||||| |||||||| || ||| ||| Sbjct 22513 CAGATCTTCGTCAAGACGTTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGAC 22572 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 22573 ACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAGCAG 22632 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || ||| | || || ||| || Sbjct 22633 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATC 22692 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| ||||| Sbjct 22693 CAGAAGGAGTCGACTCTGCACCTTGT 22718 Score = 138 bits (152), Expect = 3e-27 Identities = 155/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 ||||| |||||||| || || || || || || |||||||||||||| || ||| Sbjct 21668 CAAATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAGC--- 21724 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||| |||||||| |||||||||||||| || || ||||| || |||||| Sbjct 21725 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAG 21784 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || |||||||| || || || |||||||| || || | || ||| | || || ||| Sbjct 21785 CAGCGCCTTATCTTTGCGGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAAC 21844 Query 178101 GTCCAAAAAGAATCAACACTGCATCT 178126 |||| || || || || || || || Sbjct 21845 ATCCAGAAGGAGTCGACGCTCCACCT 21870 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| ||||||||||| ||| ||| Sbjct 21949 CAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGAGGTGGAGTCCTCGGAC 22008 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| ||||| || |||||||||||||| || || Sbjct 22009 ACCATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGG 22049 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| ||||||||||| ||| ||| Sbjct 22231 CAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGAGGTGGAGTCCTCGGAC 22290 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| ||||| || |||||||||||||| || || Sbjct 22291 ACCATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGG 22331 >seq1375 Length=30983 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || ||||| || || ||||| || || |||||||| || ||||| || ||| Sbjct 15928 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTTGAGGTCGAGTCGAGC--- 15872 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||| || ||||| ||||| ||||| || || || |||||||| |||||| Sbjct 15871 GACACTATCGACAATGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCAG 15812 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || |||||||||||||| |||||||| || || | |||||| | || || ||| Sbjct 15811 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAAC 15752 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || || || || ||||| || || Sbjct 15751 ATTCAGAAGGAGTCCACCCTGCACCTCGT 15723 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| | || || || ||| ||| Sbjct 15700 CAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGTTGGAAGTCGAGTCCTCGGAC 15641 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| ||||||||||| || ||||| || |||||||| Sbjct 15640 ACCATTGACAACGTGAAGGCGAAGATCCAGGACAAAGAGGGTATCCCGCCAGACCAGCAG 15581 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || |||||||| ||||| | |||||| | ||||| ||| | Sbjct 15580 CGTTTGATCTTCGCGGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCGGATTACAACATT 15521 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 15520 CAGAAGGAGTCGACTCTCCACCTCGT 15495 Score = 87.8 bits (96), Expect = 4e-12 Identities = 88/113 (78%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || |||||||||||||| || ||| ||| Sbjct 16209 CAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGAC 16150 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGA 178036 |||||||| || ||||| ||||| |||||| ||| ||| ||| |||||| Sbjct 16149 ACCATCGACAATGTCAAGGCCAAGATCCAGGAC-AAGGAGGGGTCCGTCCGGA 16098 >seq464 Length=19301 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || |||||||||||||||||||| || ||| Sbjct 3872 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTGGAGTCTTCGGAC 3813 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| |||||||| ||||| |||||||| || || Sbjct 3812 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGG 3772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203594106677466