Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07-
25] 8,889 sequences; 36,136,062 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq231 150 4e-31
seq230 147 5e-30
seq1375 134 3e-26
seq464 87.8 4e-12
>seq231
Length=27061
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || |||||||| || ||||| || ||| |||
Sbjct 703 CAGATCTTCGTCAAGACATTGACGGGCAAGACGATCACGCTGGAGGTCGAGTCCTCGGAC 762
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || ||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 763 ACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAGCAG 822
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||||||||| |||||||| ||||| | || ||| | ||||| ||| ||
Sbjct 823 CGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTTTCGGATTACAACATC 882
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || ||||| |||||
Sbjct 883 CAGAAGGAGTCGACTCTGCACCTTGT 908
Score = 145 bits (160), Expect = 2e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| || || || || || || |||||||||||||| || || |||
Sbjct 137 CAAATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGAC 196
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 197 ACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 256
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| |||||||| || || || |||||||| || || | |||||| | || || || ||
Sbjct 257 CGCCTTATCTTTGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAATATC 316
Query 178104 CAAAAAGAATCAACACTGCATCT 178126
|| || || || || || || ||
Sbjct 317 CAGAAGGAGTCGACGCTCCACCT 339
>seq230
Length=49901
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || |||||||| |||||||| || ||| |||
Sbjct 22513 CAGATCTTCGTCAAGACGTTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGAC 22572
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| |||||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 22573 ACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAGCAG 22632
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || |||||||| || || | || ||| | || || ||| ||
Sbjct 22633 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATC 22692
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || ||||| |||||
Sbjct 22693 CAGAAGGAGTCGACTCTGCACCTTGT 22718
Score = 138 bits (152), Expect = 3e-27
Identities = 155/206 (75%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980
||||| |||||||| || || || || || || |||||||||||||| || |||
Sbjct 21668 CAAATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAGC--- 21724
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||| ||||| |||||||| |||||||||||||| || || ||||| || ||||||
Sbjct 21725 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAG 21784
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| || |||||||| || || || |||||||| || || | || ||| | || || |||
Sbjct 21785 CAGCGCCTTATCTTTGCGGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAAC 21844
Query 178101 GTCCAAAAAGAATCAACACTGCATCT 178126
|||| || || || || || || ||
Sbjct 21845 ATCCAGAAGGAGTCGACGCTCCACCT 21870
Score = 84.2 bits (92), Expect = 5e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || ||||| ||||||||||| ||| |||
Sbjct 21949 CAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGAGGTGGAGTCCTCGGAC 22008
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024
|||||||| ||||| || |||||||||||||| || ||
Sbjct 22009 ACCATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGG 22049
Score = 84.2 bits (92), Expect = 5e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || ||||| ||||||||||| ||| |||
Sbjct 22231 CAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGAGGTGGAGTCCTCGGAC 22290
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024
|||||||| ||||| || |||||||||||||| || ||
Sbjct 22291 ACCATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGG 22331
>seq1375
Length=30983
Score = 134 bits (148), Expect = 3e-26
Identities = 156/209 (75%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980
|| || ||||| || || ||||| || || |||||||| || ||||| || |||
Sbjct 15928 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTTGAGGTCGAGTCGAGC--- 15872
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||| ||||| || ||||| ||||| ||||| || || || |||||||| ||||||
Sbjct 15871 GACACTATCGACAATGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCAG 15812
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| || || |||||||||||||| |||||||| || || | |||||| | || || |||
Sbjct 15811 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAAC 15752
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129
| || || || || || ||||| || ||
Sbjct 15751 ATTCAGAAGGAGTCCACCCTGCACCTCGT 15723
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || ||||| | || || || ||| |||
Sbjct 15700 CAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGTTGGAAGTCGAGTCCTCGGAC 15641
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||| || ||||| ||||||||||| || ||||| || ||||||||
Sbjct 15640 ACCATTGACAACGTGAAGGCGAAGATCCAGGACAAAGAGGGTATCCCGCCAGACCAGCAG 15581
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| || || |||||||| ||||| | |||||| | ||||| ||| |
Sbjct 15580 CGTTTGATCTTCGCGGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCGGATTACAACATT 15521
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 15520 CAGAAGGAGTCGACTCTCCACCTCGT 15495
Score = 87.8 bits (96), Expect = 4e-12
Identities = 88/113 (78%), Gaps = 1/113 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || ||||| || || || |||||||||||||| || ||| |||
Sbjct 16209 CAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGAC 16150
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGA 178036
|||||||| || ||||| ||||| |||||| ||| ||| ||| ||||||
Sbjct 16149 ACCATCGACAATGTCAAGGCCAAGATCCAGGAC-AAGGAGGGGTCCGTCCGGA 16098
>seq464
Length=19301
Score = 87.8 bits (96), Expect = 4e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || |||||||||||||||||||| || |||
Sbjct 3872 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTGGAGTCTTCGGAC 3813
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024
|||||||| |||||||| ||||| |||||||| || ||
Sbjct 3812 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGG 3772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203594106677466
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |