Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limonomyces_20culmigenus_20[genbank_20GCA_5F002233555.1_202017-07- 25] 8,889 sequences; 36,136,062 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1375 176 4e-39 seq230 168 6e-37 seq231 145 7e-30 seq1288 107 2e-18 seq1287 107 2e-18 seq464 95.1 1e-14 >seq1375 Length=30983 Score = 176 bits (194), Expect = 4e-39 Identities = 178/230 (77%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | || || ||||| ||| ||||||||||||||| ||||| || Sbjct 15705 CCGCCGCGGAGACGGAGGACGAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAA 15764 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||||||||| |||||||| || || ||||| ||||| | || Sbjct 15765 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGG 15824 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||| ||| ||| || ||| || | || | ||||||||||||||| | Sbjct 15825 ATGCCCTCCTTATCCTGGATCTTCGCCTTGACATTGTCG--ATAGTGTCGCTCGACTCGA 15882 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | ||| ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 15883 CCTCAAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 15932 Score = 125 bits (138), Expect = 7e-24 Identities = 170/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || || ||||||||||||||| || || || Sbjct 15476 GCCACCACGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCCGA 15535 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 || ||||| | || |||||||||||||| ||||| |||| ||||| ||||| |||| Sbjct 15536 AAGAGTGCGACCATCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGCGG 15595 Query 41754 GA-ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811 || || |||| |||||| ||| || |||| ||| | | | ||||| ||||| Sbjct 15596 GATACCCTCT--TTGTCCTGGATCTTCGCCTTC-ACGTTGTCAATGGTGTCCGAGGACTC 15652 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||| || || || || || |||||||| ||||| |||||||| Sbjct 15653 GACTTCCAACGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 15703 Score = 113 bits (124), Expect = 4e-20 Identities = 99/122 (81%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | ||| || || ||||| ||||||||| ||||| |||||||| Sbjct 15932 GCCGCCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 15991 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 ||| || || | || |||||||||||||| ||||| ||||||||||| ||||| |||| Sbjct 15992 GAGAGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGG 16051 Query 41754 GA 41755 || Sbjct 16052 GA 16053 >seq230 Length=49901 Score = 168 bits (186), Expect = 6e-37 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | || || ||||| || ||||||||| ||||| ||||| || Sbjct 22737 GCCGCCGCGCAGACGGAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 22678 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| |||||||||||||||||||| || |||||||| ||||| | || Sbjct 22677 AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGG 22618 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || | || || | ||| | | | ||||| ||||| | Sbjct 22617 GATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGA 22559 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | ||| ||||| || ||||||| |||||| ||||| ||||||||| Sbjct 22558 CCTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTGACGAAGATCTGCATG 22509 Score = 149 bits (164), Expect = 6e-31 Identities = 163/213 (77%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 41653 CACC-AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 |||| || || ||||| ||||||||| ||||| ||||| || ||||| || |||| | Sbjct 21875 CACCGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCT 21816 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 ||||||||||||| || || || |||||||| ||||| | || | || |||||||||| Sbjct 21815 CGAGCTGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC- 21757 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| | || || | ||| | | | |||||||||||||| ||||| | || || || Sbjct 21756 TGAATCTTGGCCTTGACGTTGTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTC 21697 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || ||||||||||| ||||| || |||||| Sbjct 21696 TTGCCGGTCAGCGTCTTCACGAAGATTTGCATG 21664 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | || || ||||| || ||||||||| ||||| ||||| || Sbjct 22509 GCCGCCGCGGAGGCGCAGGACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCTGA 22450 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 ||| || ||| |||| |||||||||||||| ||||| || |||||||| ||||| Sbjct 22449 GAGCGTACGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTC 22396 Score = 105 bits (116), Expect = 6e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| ||||| || ||||||||| ||||| ||||| || Sbjct 22226 CCACCACGGAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 22167 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 |||||||| |||| |||||||||||||| ||||| || |||||||| ||||| Sbjct 22166 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTC 22114 >seq231 Length=27061 Score = 145 bits (160), Expect = 7e-30 Identities = 172/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | || || ||||| || ||||||||| ||||| || || || Sbjct 927 GCCACCGCGCAGACGAAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAATCCGA 868 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || ||||||||||| |||||||| || || ||||| ||||| | || Sbjct 867 AAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGCGG 808 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || |||||||||| ||| || ||| || | || | ||||| ||||| Sbjct 807 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCG--ATCGTGTCCGAGGACTCG 750 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| ||| ||||| || ||||||| ||||| ||||| ||||||||| Sbjct 749 ACCTCCAGCGTGATCGTCTTGCCCGTCAATGTCTTGACGAAGATCTGCATG 699 Score = 131 bits (144), Expect = 2e-25 Identities = 159/213 (75%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 41653 CACC-AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 |||| || || ||||| ||||||||| || || ||||| || || ||||| |||| | Sbjct 344 CACCGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGGCCGTCCT 285 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 ||||||||||||| || || || |||||||| ||||| | || | || |||||||||| Sbjct 284 CGAGCTGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC- 226 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 || | || || | ||| | | | |||||| |||||| ||||| | || || || Sbjct 225 TGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTC 166 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || ||||||||||| ||||| || |||||| Sbjct 165 TTGCCGGTCAGCGTCTTCACGAAGATTTGCATG 133 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | || || || || ||| ||||||||| ||||| ||||| || Sbjct 699 GCCGCCGCGCAGGCGCAGGACGAGGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 640 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 ||| || ||| |||| |||||||||||||| ||||| || |||||||| ||||| Sbjct 639 GAGCGTACGCCCGTCCTCGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTC 586 >seq1288 Length=8444 Score = 107 bits (118), Expect = 2e-18 Identities = 97/121 (80%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || || || ||||| |||||| || ||||| |||||| | Sbjct 547 CCTCCGCGCAGGCGCAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCGCTG 488 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 |||||||| |||| |||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 487 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 428 Query 41755 A 41755 | Sbjct 427 A 427 >seq1287 Length=7882 Score = 107 bits (118), Expect = 2e-18 Identities = 97/121 (80%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || || || ||||| |||||| || ||||| |||||| | Sbjct 548 CCTCCGCGCAGGCGCAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCGCTG 489 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 |||||||| |||| |||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 488 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 429 Query 41755 A 41755 | Sbjct 428 A 428 >seq464 Length=19301 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| || || || || ||||||||| ||||| |||||||| || ||||| |||| || Sbjct 3602 CACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTC 3661 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGA 41755 |||||||||||| ||||| || |||||||| ||||| |||||| Sbjct 3662 GAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGCGGGA 3705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462252632246800