Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20decastes_20[genbank_20GCA_5F001950495.1_202016-12-09] 491 sequences; 43,035,370 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq53 107 2e-18 >seq53 Length=257799 Score = 107 bits (118), Expect = 2e-18 Identities = 364/560 (65%), Gaps = 9/560 (2%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 || || ||||| ||||| || || || | || || | || ||||||||||| || Sbjct 57735 CATGCGAAATCGGTATGCATGCCCTCATCACGGCTAATAAGTTCATTTGAAAATGTGAGG 57676 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| || || |||||||| ||||||||||| | ||| || || || || || ||| Sbjct 57675 CCAGGCATAAGACCGCGTTTTTTCATCCAAAATATCGAGGCGAACGATCCCGAGAAAAAT 57616 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttact-ttc 16413 || ||||| || ||||| || || || | || || | ||| || | | || | Sbjct 57615 ATGCCTTCCACAGCGGCGAAGGCGACGAGACGTTCGGCAAACG-TCGAGTGTTGGTCAGA 57557 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 ||||| | |||||| | || || | || | || ||| | || || || | Sbjct 57556 AATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGCAAGGGATGGTTTCAATGGCGTC 57497 Query 16474 AAATAAATAAtttttttCTTTGC--TATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531 ||| | ||| || || || ||| || || || || || || | | |||| Sbjct 57496 AAACAGATA--TTCCCGCTCGGCAACATCCTTGATGTATGTGTCGATGAGGAGAGAATAC 57439 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGAT 16591 | || || ||||| || ||||| ||||| || || ||||| || | ||| |||| Sbjct 57438 GTCTCGGAGTGAATGTTTTCCATCATAATCTGGAACCCGTAAAAACACCGAGCCTCGGCG 57379 Query 16592 ATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCT 16651 | || |||||| | |||| | || ||||| ||||| ||||||||||| ||| Sbjct 57378 ACCTGGACTTCATTGGAAAAACGCTCGAGCAAGTTCTCGTTGACTATTCCATCCGAAGCG 57319 Query 16652 GCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAA--AGTTTTAAC 16708 ||||| || || || | || || || | ||||| || | || | || | Sbjct 57318 GCAAAGAAGGCGAGAACATGAGAGATGAAGTGACGCTCGTTGTCATTAAGGCGATTGTTC 57259 Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768 ||||| || |||||| || | || | || ||| | ||||| || ||||| | ||| Sbjct 57258 CAGTCGTGAAGATCTTTCGAGAGGTCCATTTCCTCTGCTGTCCAGAATGAAGCTTCGGCC 57199 Query 16769 TTTTTATACATTTTCCATAT 16788 || |||||||| | ||| || Sbjct 57198 TTCTTATACATCTGCCAAAT 57179 Score = 100 bits (110), Expect = 3e-16 Identities = 297/458 (65%), Gaps = 0/458 (0%) Strand=Plus/Plus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 ||||| || || ||| | ||||| |||| || || | || ||||||||||| || Sbjct 55508 CAAGCGAAGTCCGTATGAAGACCTTCATCCCGGCTAATAAGTTCATTTGAAAATGTGAGG 55567 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| | || || || || ||||||||||| | ||| || || || ||||| ||| Sbjct 55568 CCAGGCATGAAACCACGCTTCTTCATCCAAAATATCGAGGCGAACGATCCCGAAAAAAAT 55627 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 || ||||| || ||||| || || |||| ||| || | ||||| | || || Sbjct 55628 ATGCCTTCTACAGCGGCGAAGGCGACCAGTCGTTCCGCAAACGTTGATTGCTTGTCCGCT 55687 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||| | |||||| | ||||| | || | | || |||| || || | | Sbjct 55688 ATCCACCTGAGAGCCCACTCGGCTTTGCGCTTGATGGATGGAATTGTCTCAATAGCGTCA 55747 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || ||| | | || | ||| || || ||||| || || | || | Sbjct 55748 AACAAAAGAGTCCGGTCATCCAGGTCTCTGATGTAGGTATCAATGAGCAGGGAGTAGGTC 55807 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 ||||| || | || || || |||||||||||||| || || | || || | | Sbjct 55808 TCTGAGTGTACGTTTTCTATCATGATCTGAAAACCATAGAAACAACGCGCCTCAGCCACC 55867 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 || || || | |||| | ||| | | |||||||||||| || |||||| || || Sbjct 55868 TGAACCTCGTTGGAAAATCGTTCAACGAGGTTTTCGTTAACGATACCATCGGAGGCAGCG 55927 Query 16655 AAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTT 16692 |||||||| || | || ||| |||| | |||||| Sbjct 55928 AAAAACGCCAGAACATGCGAAATGAAATATCGTTCGTT 55965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462509161332600