Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20decastes_20[genbank_20GCA_5F001950495.1_202016-12-09] 491 sequences; 43,035,370 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq53 176 5e-39 seq76 89.7 6e-13 >seq53 Length=257799 Score = 176 bits (194), Expect = 5e-39 Identities = 387/578 (67%), Gaps = 9/578 (2%) Strand=Plus/Minus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 ||||| | |||| | ||||| ||||| ||| | ||||| || | || || | | Sbjct 57753 AGATGGCTGAACAAGAGGCATGCGAAATCGGTATGCATGCCCTCATCACGGCTAATAAGT 57694 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 ||||| |||||||| | |||||||| || || | |||||| | ||| ||||| || || Sbjct 57693 TCATTTGAAAATGTGAGGCCAGGCATAAGACCGCGTTTTTTCATCCAAAATATCGAGGCG 57634 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || ||||| || || ||||| ||||| || || || || || || || | ||| || | Sbjct 57633 AACGATCCCGAGAAAAATATGCCTTCCACAGCGGCGAAGGCGACGAGACGTTCGGCAAAC 57574 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 | | | | | | |||||| | || ||||| || |||||||| || | || || Sbjct 57573 GTCGAGTGTTGGTCAGAAATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGCAAGGG 57514 Query 19183 ATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCT 19242 || || || || | | ||| ||||| ||||| | ||| || | |||| || Sbjct 57513 ATGGTTTCAATGGCGTCAAACAGATATTCCCGCTCGGCAACATCCTTGATGTATGTGTCG 57454 Query 19243 ATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAA 19302 || | | | ||| | || || ||||| ||||| || ||||| || ||||||||| Sbjct 57453 ATGAGGAGAGAATACGTCTCGGAGTGAATGTTTTCCATCATAATCTGGAACCCGTAAAAA 57394 Query 19303 CATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACT 19362 || | || || | | ||| |||||| | |||| | |||| ||| || || || ||| Sbjct 57393 CACCGAGCCTCGGCGACCTGGACTTCATTGGAAAAACGCTCGAGCAAGTTCTCGTTGACT 57334 Query 19363 ATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATG------TTTTTCA 19416 |||||||| ||| ||||| || || | ||||| || || || || ||| Sbjct 57333 ATTCCATCCGAAGCGGCAAAGAAGGCGAGAACATGAGAGATGAAGTGACGCTCGTTGTCA 57274 Query 19417 TCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTC 19476 | | ||| | || ||||| || | || |||||| || | || | ||| || ||||| Sbjct 57273 T-TAAGGCGATTG--TTCCAGTCGTGAAGATCTTTCGAGAGGTCCATTTCCTCTGCTGTC 57217 Query 19477 CAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 || || ||||| || || || |||||||| | ||| || Sbjct 57216 CAGAATGAAGCTTCGGCCTTCTTATACATCTGCCAAAT 57179 >seq76 Length=175981 Score = 89.7 bits (98), Expect = 6e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48221 ATCTGGTATCCAAAGAGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTAT 48279 |||||| |||||||| || || ||| | |||||| | | | ||||| || ||| | Sbjct 106328 ATCTGGAATCCAAAGGGCGTAGAAA-AGATCCCTCGCGCGCACCTCTTCCTTTCCATGGT 106386 Query 48280 TCCTTTT-AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338 || | | || | |||||| || | | ||||||||||||||| || | ||| || || Sbjct 106387 TCTTCCTCAAATCCAAGAAT-TCGAAGACATCAGCATGCCATGGCTCAATATAGATGGCG 106445 Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACT 48398 | | || || ||||| || || |||||||| | ||| | ||||| || ||| | Sbjct 106446 AAAGCGCCGGGGCGTTTGTTGCCACCTTGATCGACATAGCGAGCAGTGGCGTCATATGCG 106505 Query 48399 CTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 | | ||| || ||||| |||||||| |||||||||||| | ||| || Sbjct 106506 CGAAGCATCGGCACAATGCCATTTGAGTAACCATTGGTTCCGGCAATGTA 106555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105350057240