Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1 100 6e-16 seq30 93.3 9e-14 >seq1 Length=2076502 Score = 100 bits (110), Expect = 6e-16 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || ||||||||||| ||||| | ||| | ||||| || || ||||| |||||||| | Sbjct 1596452 CTCATTGGCATGAATGCTGACTTGATGTGCCAGTATATTGAGTTCGTTGCCGACCGTCTC 1596393 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || ||||| || | ||||| || |||||| | || || || | || ||||| Sbjct 1596392 CTAGTCGCACTGGGGAATGAGAAGGTCTACAACAAAACAAATCCGTTCGACTTCATGGAC 1596333 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGC--GTGTCAG 230612 | || || || || |||||||| ||||||||||| |||| ||||||| Sbjct 1596332 ATGATCTCTCTCCAGGGGAAGACTAACTTCTTCGAGAAGCGGGTGTCAG 1596284 >seq30 Length=600136 Score = 93.3 bits (102), Expect = 9e-14 Identities = 178/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 61020 GTAGACGCTCTTGGTGTTCTGCGTTTGTTAGACGCCGTTCGTATA-GCAGGTTTGA---- 61074 || |||| || ||| ||||| ||| | |||||||| || | || || |||| Sbjct 336974 GTTGACGGGCTCGGTACCCTGCGCTTGCTCGACGCCGTGCGCACCTGCGGGCTTGAGAAG 336915 Query 61075 -ACTCTCGAATTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCT 61133 || ||| | | ||| || || || || |||||||| || || || ||| | || Sbjct 336914 CACGTGCGATTCTATCAGGCCTCGACGTCCGAACTGTACGGCAAGGTCGTAGAGACGCCG 336855 Query 61134 CAAACAGAAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCT 61193 |||| || | ||| |||||||| || || |||||||| |||||||| ||||| Sbjct 336854 CAAAGTGAGACGACCCCGTTTTACCCGCGCTCGCCGTATGGCTGCGCAAAACTCTACGCG 336795 Query 61194 TACTGGAT--TTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTT 61251 |||||||| | || || || ||||||||||| || ||||||| |||||| || Sbjct 336794 TACTGGATCGTCGTCAAC--TATCGCGAGTCGTACGGCATGTTTGCCTGTAACGGCATCC 336737 Query 61252 GTTTCAATCACGAGAGTCC 61270 ||||| |||||||| || Sbjct 336736 TCTTCAACCACGAGAGCCC 336718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057819852668780