Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 185 1e-41 >seq1 Length=2076502 Score = 185 bits (204), Expect = 1e-41 Identities = 385/560 (69%), Gaps = 14/560 (3%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| |||||| ||||| || ||| || || || || | || || | |||||| ||| Sbjct 1598855 AACAGCAAACACGCGAAGTCCGTGTGAAGCCCTTCATCCCGGCTGATGAGTTCGTTCGAA 1598796 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || ||||| || ||||| | || ||||| || | ||| ||||| || || || ||||| Sbjct 1598795 AATGTGAGGCCAGGCATGAAACCGCGCTTCTTCATCCAGAATATTGAAGCGAACGATCCT 1598736 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC--CGGC-G 24302 || || || || ||||| || || || ||||| | ||||||||| || ||| || | | Sbjct 1598735 GAGAAAAATATACCTTCCACAGCAGCGAAGGCGACAAGTCTTTCCGCA-AACGTCGACTG 1598677 Query 24303 CT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361 || ||| ||||||| | | |||||||||||||| || | |||| ||||| || Sbjct 1598676 CTTGTCTGCTATCCACCTGAGCGCCCAATCGGCCTTGCGCTTGATGGAAGGAATTGTTTC 1598617 Query 24362 TATAGCATTAAAGA-GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 24420 ||||| | ||| | || || || || | |||| | | ||| |||||||| | | Sbjct 1598616 AATAGCGTCAAACAGGAGAG-TTCGCTCGTCCGGATCTCTGATATAGGTATCAATGAGCA 1598558 Query 24421 GACTA-TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 24479 || | || | ||||| || | |||||| || ||||||| || ||||| || | Sbjct 1598557 -ACGAGTAGGTCTCCGAGTGTACGTTTTCTATCATGGTTTGAAAACCATAGAAGCAACGC 1598499 Query 24480 GCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 24539 ||||| | | ||| || || | |||| ||||| | | ||||| || || || || Sbjct 1598498 GCCTCAGCCACCTGAACCTCGTTGGAAAACCGTTCAACGAGGTTTTCGTTAACGATGCCA 1598439 Query 24540 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AG 24598 ||| ||| || ||||| |||| ||||| || |||||| ||||| | | ||| || Sbjct 1598438 TCAGAGGCAGCGAAAAAGGCCAGAACATGAGAGATGAAATATCGTTCGT-TCGAGTTGAG 1598380 Query 24599 T---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 24655 | || ||||| || ||| || | || | ||| | ||| || | |||||||| || Sbjct 1598379 TTTGTTGTTCCAGTCCATGAGGTCATGCGACAGATCTATTTCCTCTGCAGTCCAAAAAGA 1598320 Query 24656 TGCCTCTGCCTTTTTATACA 24675 ||||| ||| | ||| |||| Sbjct 1598319 TGCCTGTGCTTGTTTGTACA 1598300 Score = 179 bits (198), Expect = 4e-40 Identities = 376/558 (67%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 ||||| |||||| || | ||||| || | ||||| | || ||||| || || | Sbjct 1596622 CATGCAAAATCGGTATGCATGCCCTCATCACGGCTAATGAGCTCATTGGAGAAGGTTAAG 1596681 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || || || || || | ||| || ||||| ||||||||||| || ||||| Sbjct 1596682 CCAGGCATGAGACCGCGTTTCTTCATCCAGAAGATGGAGGCAAATGATCCTGAGAAGAAG 1596741 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG---CTGTCATGT 24311 || ||||| || || |||||||||| || | ||| | || | | | |||| Sbjct 1596742 ATACCTTCAACAGCGGCAAAGGCAACGAGACGTTCGGCGAAAGTCGAGTGTCGGTCAGCA 1596801 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 |||||| | ||||||| || |||||||| || | ||||| || ||||| | |||| Sbjct 1596802 ATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGCAAGGGATGGTCTCAACGGCATCG 1596861 Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 || ||||| | || | ||| || | || || || || | || |||| | Sbjct 1596862 AACAGATACTCCCGCTCGGCAGCATCCTTGATGTAAGTGTCGATGAGGAGGGAATACGTC 1596921 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 || || || |||||||| || || || || || |||||||| | |||||||| | | Sbjct 1596922 TCGGAGTGGATGTTTTCCATCATAATCTGGAACCCATAGAAACACCGAGCCTCGGCGACC 1596981 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || ||||| | |||| ||||| ||||| ||||| ||||| || || ||| ||| Sbjct 1596982 TGAACTTCGTTGGAAAAGCGTTCGAGCAAATTCTCATTGACTATCCCATCGGAGGCAGCA 1597041 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----GTTTATTCCA 24607 || || || | || || || || | |||| || |||| | || ||||| Sbjct 1597042 AAGAAGGCGAGGACGTGAGAGATGAAGTGGCGCTCGT-TGTCGTTAAGGCGGTTGTTCCA 1597100 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 || | | ||| || || | |||| ||| ||| ||||||| || || || || ||||| Sbjct 1597101 GTCGTGAAGATCCTTCGAGAGGTCCATTTCCTCCGCTGTCCAGAACGAAGCTTCAGCCTT 1597160 Query 24668 TTTATACATATTCCAGAT 24685 |||||||| | |||||| Sbjct 1597161 CTTATACATCTGCCAGAT 1597178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719329014880