Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 271 8e-68 seq18 154 2e-32 seq15 87.8 2e-12 seq8 87.8 2e-12 seq23 86.0 6e-12 >seq1 Length=2076502 Score = 271 bits (300), Expect = 8e-68 Identities = 404/571 (71%), Gaps = 9/571 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||| || ||||| || || ||||||||||| | ||||| ||||||| Sbjct 1597178 ATCTGGCAGATGTATAAGAAGGCTGAAGCTTCGTTCTGGACAGCGGAGGAAATGGACCTC 1597119 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || ||||| ||||||| | ||| | ||||||||||||||||| |||||| Sbjct 1597118 TCGAAGGATCTTCACGACTGGAACAACCGCCTTAACGACAACGAGCGCCACTTCATCTCT 1597059 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||| || || ||| ||| || || ||||| |||||| || |||| || Sbjct 1597058 CACGTCCTCGCCTTCTTTGCTGCCTCCGATGGGATAGTCAATGAGAATTTGCTCGAACGC 1596999 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || | | || || ||||| |||||||| ||||| ||||| || || ||||| ||| Sbjct 1596998 TTTTCCAACGAAGTTCAGGTCGCCGAGGCTCGGTGTTTCTATGGGTTCCAGATTATGATG 1596939 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCG 116929 || ||| | ||||| || | |||||| |||||||||||| ||| | | || | Sbjct 1596938 GAAAACATCCACTCCGAGACGTATTCCCTCCTCATCGACACTTACATCAAGGATGCTGCC 1596879 Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 ||| | || | |||| | ||| | ||||| || || ||| |||| ||||||| Sbjct 1596878 GAGCGGGAG---TATCTGTTCGATGCCGTTGAGACCATCCCTTGCATCAAGAAGAAGGCG 1596822 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || ||||| || | ||||| || | | || | | | |||| ||| || || || ||| Sbjct 1596821 GAATGGGCTCTCAGGTGGATTGCTGACCGACACTCGACTTTCGCCGAACGTCTCGTTGCC 1596762 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 || || || || || || ||||||| || || || ||| |||| || ||| | ||| Sbjct 1596761 TTTGCCGCTGTTGAAGGTATCTTCTTCTCAGGATCATTTGCCTCCATCTTCTGGATGAAG 1596702 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 |||||||| |||||||| ||| | || ||| ||| |||||||| | | || ||||| Sbjct 1596701 AAACGCGGTCTCATGCCTGGCTTAACCTTCTCCAATGAGCTCATTAGCCGTGATGAGGGC 1596642 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 ||||| ||| ||||| || | ||||||| Sbjct 1596641 ATGCATACCGATTTTGCATGCCTCCTGTTCA 1596611 Score = 199 bits (220), Expect = 4e-46 Identities = 382/561 (68%), Gaps = 9/561 (2%) Strand=Plus/Plus Query 116646 TGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACA 116705 |||||||| | || |||| || || ||||| | ||||| | || ||||| | ||| Sbjct 1598300 TGTACAAACAAGCACAGGCATCTTTTTGGACTGCAGAGGAAATAGATCTGTCGCATGACC 1598359 Query 116706 CGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGG 116762 | |||||| | | | ||| ||||| || |||||||| || || |||| Sbjct 1598360 TCATGGACTGGAACAACAAACTCAACTCGAACGAACGATATTTCATCTCTCATGTTCTGG 1598419 Query 116763 CCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGG 116822 |||||||||| ||| || |||||||| ||||| || || || || || || | | | Sbjct 1598420 CCTTTTTCGCTGCCTCTGATGGCATCGTTAACGAAAACCTCGTTGAACGGTTTTCCAACG 1598479 Query 116823 AGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGC 116882 |||| |||||||| |||||||| |||||||| || ||||| | | || || ||||| | Sbjct 1598480 AGGTTCAGGTGGCTGAGGCGCGTTGCTTCTATGGTTTTCAAACCATGATAGAAAACGTAC 1598539 Query 116883 ACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAG---AAGC 116939 ||||||| | || ||| ||||| || || || | | | |||| ||| | | Sbjct 1598540 ACTCGGAGACCTACTCGTTGCTCATTGATACCTATATCAGAGATCCGGACGAGCGAACTC 1598599 Query 116940 TCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGC 116999 ||| |||| |||| || || || || || | | |||| |||||||| ||||||| Sbjct 1598600 TCC---TGTTTGACGCTATTGAAACAATTCCTTCCATCAAGCGCAAGGCCGATTGGGCGC 1598656 Query 117000 TGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCG 117059 | | ||||| || | || || | | || | || | || || |||||||| || | Sbjct 1598657 TCAGGTGGATAGCAGACAAGCAGTCGACGTTTGCGGAAAGACTTGTCGCCTTCGCTGCTG 1598716 Query 117060 TCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCC 117119 | || || | || || || || ||||| | ||||| ||| | ||||| ||||| Sbjct 1598717 TGGAAGGTATATTTTTCTCAGGATCGTTCGCTTCAATATTCTGGATGAAGAAGCGCGGTT 1598776 Query 117120 TCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCG 117179 ||||||| ||||| || || ||||| |||||| | |||| || || || || | Sbjct 1598777 TCATGCCTGGCCTCACATTTTCGAACGAACTCATCAGCCGGGATGAAGGGCTTCACACGG 1598836 Query 117180 ACTTTGCCTGTTTGCTGTTCA 117200 |||| || ||||||||||||| Sbjct 1598837 ACTTCGCGTGTTTGCTGTTCA 1598857 >seq18 Length=860724 Score = 154 bits (170), Expect = 2e-32 Identities = 160/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| || || ||||| || || ||||||||| |||| ||||| | | Sbjct 789333 ATGCAAATATTCGTTAAGACACTCACTGGAAAGACCATCACCCTCGAAGTCGAGTCGTCG 789392 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| ||||||||||| | ||||| Sbjct 789393 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 789451 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| ||||| || || ||||| || | ||||| ||| ||||||||| Sbjct 789452 ACAACGCCTGATCTTTGCGGGTAAGCAACTGGAAGATGGTCGCACTCTCTCCGACTACAA 789511 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| |||| || ||||| Sbjct 789512 TATCCAGAAGGAGTCCACACTTCATCT 789538 Score = 150 bits (166), Expect = 2e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | | Sbjct 789610 ATGCAGATCTTCGTCAAGACACTCACTGGCAAGACCATCACCCTCGAAGTCGAGTCATCG 789669 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| |||||||||||| | ||||| Sbjct 789670 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCA 789728 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||| | ||| || || ||||| || |||| ||| || ||| |||||||| Sbjct 789729 ACAACGTCTCATTTTCGCCGGAAAGCAGCTCGAAGACGGGCGGACACTCTCAGACTACAA 789788 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 789789 CATCCAGAAGGAGTCAACCCTTCACCTTGT 789818 Score = 136 bits (150), Expect = 4e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||||||||| || || || || ||| |||| ||||| | || Sbjct 790115 ATGCAAATTTTCGTCAAAACGCTCACTGGGAAGACGATTACCCTCGAGGTCGAGTCGTCC 790174 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || |||| |||||| || || | ||||| || ||||||||| | ||||| Sbjct 790175 GATACGATTGACAACG-TCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 790233 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || ||||| || |||| ||| || ||| |||||||| Sbjct 790234 GCAGCGCTTGATCTTCGCTGGTAAGCAGCTTGAGGACGGGCGGACGCTCTCGGACTACAA 790293 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| ||| ||||| Sbjct 790294 CATTCAGAAGGAGAGCACCCTGCA 790317 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || || || ||| | || || || | | Sbjct 789838 ATGCAGATTTTCGTGAAGACGCTTACTGGGAAGACTATTACCCTTGAGGTTGAGTCGTCG 789897 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| ||| |||| |||||||||||||| || | ||||| Sbjct 789898 GACACTATCGACAACG-TCAAGGCAAAGATTCAGGACAAAGAGGGCATTCCGCCCGACCA 789956 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||| || || | |||||| || ||||| || Sbjct 789957 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGCACTCTATCTGACTATAA 790016 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 ||| ||||||||| |||| || ||||| Sbjct 790017 CATTCAGAAGGAGTCCACTCTCCATCT 790043 Score = 93.3 bits (102), Expect = 4e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 40793 GCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCA 40852 ||||||| | ||||| |||||||| |||| ||| ||||||||||| || |||| |||| Sbjct 789208 GCATCCCTCCCGACCAACAACGACTGATCTTCGCTGGCAAACAGCTTGAAGACGGACGCA 789267 Query 40853 CCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGG 40912 | || || ||||| || ||||||||| | ||||| || || ||| | |||||| | | Sbjct 789268 CACTATCTGATTACAATATTCAGAAGGAGTCTACGCTTCACCTCGTGCTTCGCTTGCGCG 789327 Query 40913 GCGG 40916 | || Sbjct 789328 GTGG 789331 >seq15 Length=1191322 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 || ||| | ||||||||||| || |||| ||| || || ||||| || || | ||||| Sbjct 976219 ATTCCCCCTGACCAGCAACGCCTGATCTTCGCTGGAAAGCAGCTCGAGGATGGACGCACT 976278 Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || | |||||||||||||||||||||| | ||||| || Sbjct 976279 CTAAGCGACTACAACATCCAGAAGGAGTCGACGCTTCA 976316 >seq8 Length=1449076 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 ||||| | |||||||| || || |||| ||| ||||| ||||| || || | |||||| Sbjct 782600 ATCCCTCCCGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACC 782541 Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| |||||||||||| || |||||| |||| || || Sbjct 782540 CTCAGCGACTACAACATTCAAAAGGAGTCCACCCTCCA 782503 >seq23 Length=668295 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||||||||| |||| ||| || || ||||| || || | ||||| ||| ||| Sbjct 509294 GACCAGCAACGACTGATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACTCTCTCCGAT 509353 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||||||||| |||| || || || Sbjct 509354 TACAACATCCAGAAGGAGTCCACCCTCCACCT 509385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217229286560