Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq18 118 9e-22 seq8 107 2e-18 seq5 102 7e-17 seq15 89.7 4e-13 >seq18 Length=860724 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || |||||||| || || | ||||||| |||||| ||||| Sbjct 790040 TGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGCTGC 789981 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| |||| ||||||||||| ||||| || |||||||| ||||| ||| ||| Sbjct 789980 TTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCCTGAATCTTT 789921 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| ||||||| ||| ||||| | ||| | || || || || Sbjct 789920 GCCTTGACGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCCAGTA 789861 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||||||||| Sbjct 789860 AGCGTCTTCACGAAAATCTGCAT 789838 Score = 111 bits (122), Expect = 1e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTG--CGCGTATCCTCGAGCTGTTTTC 118599 || ||||| || || |||||||| || | | |||| ||| || |||||||| |||| Sbjct 789806 GTTGACTCCTTCTGGATGTTGTAGTC--TGAGAGTGTCCGCCCGTCTTCGAGCTGCTTTC 789749 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 | ||| | |||||||| || || ||||| || |||||||||||||| ||| || | Sbjct 789748 CGGCGAAAATGAGACGTTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCT 789689 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | |||| |||||||| |||||| |||| ||| | || ||||| || || | Sbjct 789688 TGACGTTGTCGATGGTGTCCGATGACTCGACTTCGAGGGTGATGGTCTTGCCAGTGAGTG 789629 Query 118720 TTTTTACAAAAATCTGCAT 118738 | || || || |||||||| Sbjct 789628 TCTTGACGAAGATCTGCAT 789610 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 118529 CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCT 118587 |||| || || | ||| ||||| || || || ||||| ||| | |||||| ||| | Sbjct 789543 CACCGAGATGAAGTGTGGACTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCTT 789484 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | || || || || || |||| || || || || || ||||| |||||||||||||| Sbjct 789483 CCAGTTGCTTACCCGCAAAGATCAGGCGTTGTTGGTCAGGAGGGATGCCCTCCTTGTCCT 789424 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| || || || | |||| |||||||| |||||| |||| ||| | || | Sbjct 789423 GAATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACTTCGAGGGTGATGGTCT 789364 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || || || || || ||||| Sbjct 789363 TTCCAGTGAGTGTCTTAACGAATATTTGCAT 789333 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 118531 CCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 ||||||| | || ||| || ||||||||||| || | || ||| ||||| | Sbjct 790322 CCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTCCGCCCGTCCTCAA 790263 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || |||||| |||| | |||||||| || || || ||||| |||||||| | Sbjct 790262 GCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGA 790203 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | || || | ||||||||||| ||| | ||| || | Sbjct 790202 TCTTCGCCTTGACGTTGTCAATCGTATCGGACGACTCGACCTCGAGGGTAATCGTCTTCC 790143 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || ||||| || ||||| ||||| Sbjct 790142 CAGTGAGCGTTTTGACGAAAATTTGCAT 790115 >seq8 Length=1449076 Score = 107 bits (118), Expect = 2e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| |||||||||||||| ||||| | ||||| ||||||| Sbjct 782497 ACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCG 782556 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633 ||||| || |||||| |||| || |||||||| |||||||| || Sbjct 782557 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGAGGGAT 782600 >seq5 Length=1591901 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||| || || ||| | ||| || ||||||||||| || ||| Sbjct 947779 GTCGACTCCTTCTGAATATTATAGTCGGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCA 947838 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||||||||| || |||||||| || ||||| || ||||| ||| || || Sbjct 947839 GCGAAGATGAGACGTTGTTGATCGGGGGGAATGCCTTCTTTGTCCTGAATCTTCGCCTTG 947898 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || | ||| ||||||| || | ||| || || || || ||| Sbjct 947899 ACATTATCAATGGTATCGGATGACTCAACCTCGAGAGTGATCGTCTTCCCAGTAAGGGTT 947958 Query 118722 TTTACAAAAATCTGCATGGCT 118742 || || || ||||||||| || Sbjct 947959 TTGACGAAGATCTGCATGCCT 947979 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| ||||||||||| |||||||||||||| | ||||| ||||||||||| Sbjct 948001 TGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGAAAGTGTGCGGCCGTCCTCGAGCTGC 948060 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633 || |||||| |||| ||||| ||||| || ||||| || Sbjct 948061 TTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGGAT 948098 >seq15 Length=1191322 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||||| | |||||| ||||||| Sbjct 976322 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTTAGAGTGCGTCCATCCTCG 976263 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633 ||||| ||||||||| |||| || || ||||| || || || || Sbjct 976262 AGCTGCTTTCCAGCGAAGATCAGGCGTTGCTGGTCAGGGGGAAT 976219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828782083752