Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq18 127 2e-24 seq5 111 2e-19 >seq18 Length=860724 Score = 127 bits (140), Expect = 2e-24 Identities = 155/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 42976 CCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTA 43035 |||| |||| ||||||||||| ||||| ||||| || | || |||||| |||| || | Sbjct 790322 CCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTCCGCCCGTCCTCAA 790263 Query 43036 GCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGA 43095 |||||||||||||||| || | ||||||||||| | || | || ||||||||| || Sbjct 790262 GCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGA 790203 Query 43096 TTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 | || |||| ||| | | | ||| ||| ||| || || |||| || || || || Sbjct 790202 TCTTCGCCTTGA-CGTTGTCAATCGTATCGGACGACTCGACCTCGAGGGTAATCGTCTTC 790144 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || ||||| || || || |||||||| Sbjct 790143 CCAGTGAGCGTTTTGACGAAAATTTGCAT 790115 Score = 105 bits (116), Expect = 8e-18 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| || || |||| ||||| ||| | || || |||||||| ||||| || Sbjct 790029 CTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGCTGCTTGCCAGCAAA 789970 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||||| ||| | || ||| |||||| ||| | |||| |||| || Sbjct 789969 GATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCC-TGAATCTTTGCCTTGA-CG 789912 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | ||||| ||| || || || | || || || || || || |||||||| Sbjct 789911 TTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCCAGTAAGCGTCTTC 789852 Query 43170 ACAAAGATTTGCAT 43183 || || || ||||| Sbjct 789851 ACGAAAATCTGCAT 789838 >seq5 Length=1591901 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 |||||||| || || ||||||||||| | || || || |||| ||||||||||| ||| Sbjct 947551 GTGCTCTCTTTCTGGATATTGTAATCTGACAATGTACGTCCGTCTTCTAGCTGCTTTCCA 947610 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || || || || ||||| |||| || | | || || ||| ||| || ||| Sbjct 947611 GCAAAAATAAGGCGTTGCTGATCGGGAGGAATCCCTTCTTTATCCTGGATCTTCGCTTTC 947670 Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | ||| | | | |||||| || || || || | ||||||||| |||||||| | ||| Sbjct 947671 A-CGTTGTCAATAGTGTCGGATGACTCGACCTCCAACGTGATGGTCTTGCCCGTCAACGT 947729 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| |||||||| ||||| Sbjct 947730 CTTGACAAAGATCTGCAT 947747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571815412797680