Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq18 104 2e-17 >seq18 Length=860724 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||||||||| |||||||||||||||||||||||||| || || |||| || | Sbjct 790322 CCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTCCGCCCGTCCTCAA 790263 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || ||||| ||||| ||||| ||||| || || | || ||||||||| | Sbjct 790262 GCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGA 790203 Query 45249 TTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 | || ||| | || | || | | || ||| ||||| | |||||||||||| Sbjct 790202 TCTTCGCCTTGA-CGTTGTCAATCGTATCGGACGACTCGACCTCGAGGGTAATCGTCTTC 790144 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || || || |||||||| Sbjct 790143 CCAGTGAGCGTTTTGACGAAAATTTGCAT 790115 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| ||| || |||| || || || ||||||||||| Sbjct 789801 CTCCTTCTGGATGTTGTAGTCTGAGAGTGTCCGCCCGTCTTCGAGCTGCTTTCCGGCGAA 789742 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || ||||||||||| || | |||||||||||| ||| || ||| || Sbjct 789741 AATGAGACGTTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 789682 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| ||| || || | ||| || |||||||| || || ||||| || Sbjct 789681 GTCGATGGTGTCCGATGACTCGACTTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTGAC 789622 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 789621 GAAGATCTGCAT 789610 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||| || ||||||||| || |||| | || |||||||| Sbjct 789535 TGAAGTGTGGACTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCTTCCAGTTGC 789476 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || |||| || |||||||| ||||| | |||||||||||| ||| || Sbjct 789475 TTACCCGCAAAGATCAGGCGTTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTG 789416 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | ||||| ||| || || | ||| || ||||| || || Sbjct 789415 GCCTTGACGTTGTCGATGGTGTCCGACGACTCGACTTCGAGGGTGATGGTCTTTCCAGTG 789356 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || |||||||| Sbjct 789355 AGTGTCTTAACGAATATTTGCAT 789333 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 45126 ATACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||| || || || ||| ||||||||||||||| ||||| || ||| | || Sbjct 790049 ATACCGAGATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCC 789990 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || || || |||| ||||| |||||||| || | ||||| |||||| Sbjct 789989 TCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCC 789930 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| ||| ||| || | | ||||| ||| ||||| | |||||| ||| Sbjct 789929 TGAATCTTTGCCTTGACGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTC 789870 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || |||||||| || || ||||| Sbjct 789869 TTCCCAGTAAGCGTCTTCACGAAAATCTGCAT 789838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073726616426