Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1 149 6e-31 >seq1 Length=2076502 Score = 149 bits (164), Expect = 6e-31 Identities = 419/639 (66%), Gaps = 11/639 (2%) Strand=Plus/Plus Query 14117 AATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGA 14176 ||| ||| ||| |||| |||||||| | || ||| | | || | || | ||| Sbjct 1596535 AATGCTTGTTCAATAGTGACAGCCTCAGTAATGATAGCCTTGATGGTATCGGGATGAGGG 1596594 Query 14177 GGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTA 14236 || ||| ||||| | || | | || |||||||| ||| | ||||||||| | Sbjct 1596595 CGACGTTTGAGATGGCTGAACAGGAGGCATGCAAAATCGGTATGCATGCCCTCATCACGG 1596654 Query 14237 CTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAAT 14296 ||||| || || || || || ||||| || ||||| | || ||||| || | ||| || Sbjct 1596655 CTAATGAGCTCATTGGAGAAGGTTAAGCCAGGCATGAGACCGCGTTTCTTCATCCAGAAG 1596714 Query 14297 ATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGT 14356 || | || |||||||| || ||||| || || ||||| || ||||| || | | ||| Sbjct 1596715 ATGGAGGCAAATGATCCTGAGAAGAAGATACCTTCAACAGCGGCAAAGGCAACGAGACGT 1596774 Query 14357 TCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttA 14416 || | || | | | | || | ||||| | ||||||||| | || || || Sbjct 1596775 TCGGCGAAAGTCGAGTGTCGGTCAGCAATCCACCTGAGAGCCCATTCCGCCTTCTTCTTG 1596834 Query 14417 ATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTA--CTTGAAA 14474 || || || || |||| |||| || | || ||| ||| || | ||||| Sbjct 1596835 ATGCAAGGGATGGTCTCAACGGCATCGAACAGATACTCCCGCTCGGCAGCATCCTTGA-- 1596892 Query 14475 TGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAA 14534 |||| || || || || | | |||| | || ||||| ||||||||||| ||||| | Sbjct 1596893 TGTAAGTGTCGATGAGGAGGGAATACGTCTCGGAGTGGATGTTTTCCATCATAATCTGGA 1596952 Query 14535 AACCATAAAAACATCTAGCTTC--TGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAA 14592 | ||||| ||||| | ||| || |||| || || || | |||| | |||| ||| Sbjct 1596953 ACCCATAGAAACACCGAGCCTCGGCGACC--TGAACTTCGTTGGAAAAGCGTTCGAGCAA 1597010 Query 14593 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14652 ||| ||||| ||||| ||||| || ||||| || || | | || || |||| Sbjct 1597011 ATTCTCATTGACTATCCCATCGGAGGCAGCAAAGAAGGCGAGGACGTGAGAGATGAAGTG 1597070 Query 14653 TTGCTC---TTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTC 14709 |||| || || | | || ||||| ||| | |||||| || || || | ||| Sbjct 1597071 GCGCTCGTTGTCGTTAAGGCGGTTGTTCCAGTCGTGAAGATCCTTCGAGAGGTCCATTTC 1597130 Query 14710 ATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748 || ||||||| || ||| |||| || |||||||| Sbjct 1597131 CTCCGCTGTCCAGAACGAAGCTTCAGCCTTCTTATACAT 1597169 Score = 131 bits (144), Expect = 2e-25 Identities = 291/435 (67%), Gaps = 4/435 (1%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 |||||||| || || ||||| || ||||| | || || |||||||| |||||||| Sbjct 1598849 AAACACGCGAAGTCCGTGTGAAGCCCTTCATCCCGGCTGATGAGTTCGTTCGAAAATGTG 1598790 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 | || ||||| || || || || || | ||| ||||||| |||||| ||||| || || Sbjct 1598789 AGGCCAGGCATGAAACCGCGCTTCTTCATCCAGAATATTGAAGCGAACGATCCTGAGAAA 1598730 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 ||||| || || || ||||| || || | | || ||| |||||| | | |||| Sbjct 1598729 AATATACCTTCCACAGCAGCGAAGGCGACAAGTCTTTCCGCAAACGTCGACTGCTTGTCT 1598670 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 | |||||| | ||||| || | || || || || |||||||||||||| Sbjct 1598669 GCTATCCACCTGAGCGCCCAATCGGCCTTGCGCTTGATGGAAGGAATTGTTTCAATAGCG 1598610 Query 14441 TTAAATA--AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14498 | ||| | | |||| ||| | | | | || || |||||||| || || | Sbjct 1598609 TCAAACAGGAGAGTTCG--CTCGTCCGGATCTCTGATATAGGTATCAATGAGCAACGAGT 1598552 Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 | | || ||||||| |||||| || | ||||||||||| || || | || || | Sbjct 1598551 AGGTCTCCGAGTGTACGTTTTCTATCATGGTTTGAAAACCATAGAAGCAACGCGCCTCAG 1598492 Query 14559 ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618 | || ||||| | |||| | ||| | | ||||| ||||| || |||||| | Sbjct 1598491 CCACCTGAACCTCGTTGGAAAACCGTTCAACGAGGTTTTCGTTAACGATGCCATCAGAGG 1598432 Query 14619 CTGCAAAAAATGCCA 14633 | || ||||| |||| Sbjct 1598431 CAGCGAAAAAGGCCA 1598417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482343755028080