Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 178 1e-39 seq18 114 1e-20 seq5 114 1e-20 >seq1 Length=2076502 Score = 178 bits (196), Expect = 1e-39 Identities = 380/562 (68%), Gaps = 7/562 (1%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | ||||| || ||||| ||||| ||||| ||||| | || ||| | ||||| Sbjct 1597178 ATCTGGCAGATGTATAAGAAGGCTGAAGCTTCGTTCTGGACAGCGGAGGAAATGGACCTC 1597119 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTC---AAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||||| ||| ||| | || | || || ||| | | || || Sbjct 1597118 TCGAAGGATCTTCACGACTGGAACAACCGCCTTAACGACAACGAGCGCCACTTCATCTCT 1597059 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || || || || |||||||| || || || ||||||||| ||||| | Sbjct 1597058 CACGTCCTCGCCTTCTTTGCTGCCTCCGATGGGATAGTCAATGAGAATTTGCTCGAACGC 1596999 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||||| | ||||| || || | ||||| | || || || || || || | || Sbjct 1596998 TTTTCCAACGAAGTTCAGGTCGCCGAGGCTCGGTGTTTCTATGGGTTCCAGATTATGATG 1596939 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 |||||| | || || || | |||||| || |||||||| || ||| | ||||| | | Sbjct 1596938 GAAAACATCCACTCCGAGACGTATTCCCTCCTCATCGACACTTACATCAAGGATGCTGCC 1596879 Query 57867 GAGAAAC-GTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 ||| ||| |||||| | || | || || || || ||| |||||||| || Sbjct 1596878 GAGCGGGAGTAT-CTGTTCGATGCCGTTGAGACCATCCCTTGCATCAAGAAGAAGGCGGA 1596820 Query 57926 GTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGT 57984 ||| | ||| ||||| | || ||| | || |||||||| | || | || | Sbjct 1596819 ATGGGCTCTCAGGTGGATTGCTGACCGACACT-CGACTTTCGCCGAACGTCTCGTTGCCT 1596761 Query 57985 TCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGA 58044 | ||||| || |||||||| ||||| || || ||||| | || || |||||||||| Sbjct 1596760 TTGCCGCTGTTGAAGGTATCTTCTTCTCAGGATCATTTGCCTCCATCTTCTGGATGAAGA 1596701 Query 58045 AACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTC 58104 ||||||| || ||||| ||| | || || ||| ||| | || || || ||||| Sbjct 1596700 AACGCGGTCTCATGCCTGGCTTAACCTTCTCCAATGAGCTCATTAGCCGTGATGAGGGCA 1596641 Query 58105 TCCATACTGATTTTGCGTGCCT 58126 | ||||| |||||||| ||||| Sbjct 1596640 TGCATACCGATTTTGCATGCCT 1596619 Score = 165 bits (182), Expect = 7e-36 Identities = 373/556 (67%), Gaps = 21/556 (4%) Strand=Plus/Plus Query 57580 TGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATC 57639 |||||||| | ||| | ||||| |||||||| | || ||| |||| ||||| | || | Sbjct 1598300 TGTACAAACAAGCACAGGCATCTTTTTGGACTGCAGAGGAAATAGATCTGTCGCATGACC 1598359 Query 57640 TGAGCGATTGGGATTCC---CTCAAA--GAATCTGAGAGAAATTTTATTAAACACGTGTT 57694 | | || ||| | | ||||| ||| || || |||| || || || | Sbjct 1598360 TCATGGACTGGAACAACAAACTCAACTCGAAC--GAACGATATTTCATCTCTCATGTTCT 1598417 Query 57695 GGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACA 57754 ||| |||||||| || || ||||| || |||||||| || | || ||| | ||||| | Sbjct 1598418 GGCCTTTTTCGCTGCCTCTGATGGCATCGTTAACGAAAACCTCGTTGAACGGTTTTCCAA 1598477 Query 57755 AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGT 57814 || || || ||| | |||||| | ||||| || || |||||| || |||||||| Sbjct 1598478 CGAGGTTCAGGTGGCTGAGGCGCGTTGCTTCTATGGTTTTCAAACCATGATAGAAAACGT 1598537 Query 57815 GCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACG 57874 || || || | || ||| | ||||| ||||| || | | || |||||| | Sbjct 1598538 ACACTCGGAGACCTACTCGTTGCTCATTGATACCTATATCAGAGATCCGGACGAGCGAAC 1598597 Query 57875 TAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTC 57931 | ||||| |||| || |||||||| || | ||| ||| ||||| || ||| | Sbjct 1598598 TCTCCTGTTTGACGCTATTGAAACAATTCCTTCCATC---AAGCGCAAGGCCGATTGGGC 1598654 Query 57932 AATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCG 57987 ||| |||||| | |||| | | ||||| || || || || |||| |||| Sbjct 1598655 GCTCAGGTGGATAGCAGACAAGCA----GTCGACGTTTGCGGAAAGACTTGTCGCCTTCG 1598710 Query 57988 CCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAAC 58047 | || || ||||||||||| || || || || || ||||||| ||||||||||| | Sbjct 1598711 CTGCTGTGGAAGGTATATTTTTCTCAGGATCGTTCGCTTCAATATTCTGGATGAAGAAGC 1598770 Query 58048 GCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCC 58107 |||| | ||||| ||||| || ||| ||||| | || || || || || || | Sbjct 1598771 GCGGTTTCATGCCTGGCCTCACATTTTCGAACGAACTCATCAGCCGGGATGAAGGGCTTC 1598830 Query 58108 ATACTGATTTTGCGTG 58123 | || || || ||||| Sbjct 1598831 ACACGGACTTCGCGTG 1598846 >seq18 Length=860724 Score = 114 bits (126), Expect = 1e-20 Identities = 155/212 (73%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || || || || ||| | || ||||| |||| Sbjct 789838 ATGCAGATTTTCGTGAAGACGCTTACTGGGAAGACTATTACCCTTGAGGTTGAGTCGTCG 789897 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | ||||| || ||| | |||||| || ||| | ||||||||||| Sbjct 789898 GACACTATCGACAACGTCAAGGCAAAGATTCA-GGACAAAGAGGGCATTCCGCCCGACCA 789956 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| | || || ||| | || ||||| Sbjct 789957 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGCACTCTATCTGACTATAA 790016 Query 31372 CATTCAAAAAGAATCGACTCTTCATCT-GGTA 31402 |||||| || || || ||||| ||||| |||| Sbjct 790017 CATTCAGAAGGAGTCCACTCTCCATCTCGGTA 790048 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || || || ||||| ||| |||| || || ||||| Sbjct 790115 ATGCAAATTTTCGTCAAAACGCTCACTGGGAAGACGATTACCCTCGAGGTCGAGTCGTCC 790174 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| || || ||||||||||||| | || || |||||| Sbjct 790175 GATACGATTGACAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 790234 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||| | || |||||||| || ||| | || ||| Sbjct 790235 CAGCGCTTGATCTTCGCTGGTAAGCAGCTTGAGGAC 790270 >seq5 Length=1591901 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || || || || || || |||||||| |||| ||||| | || Sbjct 947976 CATGCAGATCTTCGTCAAAACCCTTACTGGGAAGACGATCACTCTCGAGGTTGAGTCATC 947917 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | || | ||||| || || |||||| |||||| | || ||||| || Sbjct 947916 CGATACCATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCCGATCA 947857 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || ||||||||||| ||| | || ||| ||| | ||| ||||| Sbjct 947856 ACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACTCTTTCCGACTATAA 947797 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || |||||||||||||| || ||| | ||| | || || Sbjct 947796 TATTCAGAAGGAGTCGACTCTTCATCTCGTCCTTCGTCTGCGCGGAGG 947749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764694943520