Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 185 1e-41 seq3 82.4 1e-10 >seq1 Length=2076502 Score = 185 bits (204), Expect = 1e-41 Identities = 385/560 (69%), Gaps = 14/560 (3%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| |||||| ||||| || ||| || || || || | || || | |||||| ||| Sbjct 1598855 AACAGCAAACACGCGAAGTCCGTGTGAAGCCCTTCATCCCGGCTGATGAGTTCGTTCGAA 1598796 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || ||||| || ||||| | || ||||| || | ||| ||||| |||||||| ||||| Sbjct 1598795 AATGTGAGGCCAGGCATGAAACCGCGCTTCTTCATCCAGAATATTGAAGCGAACGATCCT 1598736 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGC-G 33749 || || || || ||||| || ||||| ||||| | |||||| || || ||| || | | Sbjct 1598735 GAGAAAAATATACCTTCCACAGCAGCGAAGGCGACAAGTCTTTCCGCA-AACGTCGACTG 1598677 Query 33750 CT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 || ||| ||||||| | | |||||||||||||| || | |||| || ||||| Sbjct 1598676 CTTGTCTGCTATCCACCTGAGCGCCCAATCGGCCTTGCGCTTGATGGAAGGAATTGTTTC 1598617 Query 33809 TATGGCATTAAAGA-GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867 || || | ||| | || || || || | |||| | | ||| ||||| || | | Sbjct 1598616 AATAGCGTCAAACAGGAGAG-TTCGCTCGTCCGGATCTCTGATATAGGTATCAATGAGCA 1598558 Query 33868 GACTA-TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33926 || | || | ||||| || | |||||| || | ||||| || ||||| || | Sbjct 1598557 -ACGAGTAGGTCTCCGAGTGTACGTTTTCTATCATGGTTTGAAAACCATAGAAGCAACGC 1598499 Query 33927 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCA 33986 ||||| | | ||| || || | |||| ||||| | | ||||| || || || ||| Sbjct 1598498 GCCTCAGCCACCTGAACCTCGTTGGAAAACCGTTCAACGAGGTTTTCGTTAACGATGCCA 1598439 Query 33987 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AG 34045 ||| ||| || ||||| |||| ||||| || |||||| ||||| | | ||| || Sbjct 1598438 TCAGAGGCAGCGAAAAAGGCCAGAACATGAGAGATGAAATATCGTTCGT-TCGAGTTGAG 1598380 Query 34046 T---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 34102 | || ||||| || ||| || | || | ||| | ||| || | |||||||| || Sbjct 1598379 TTTGTTGTTCCAGTCCATGAGGTCATGCGACAGATCTATTTCCTCTGCAGTCCAAAAAGA 1598320 Query 34103 TGCCTCTGCCTTTTTATACA 34122 ||||| ||| | ||| |||| Sbjct 1598319 TGCCTGTGCTTGTTTGTACA 1598300 >seq3 Length=1723946 Score = 82.4 bits (90), Expect = 1e-10 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 63279 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCC 63337 |||||||| ||||||||||| || ||| || ||||| || | || || || ||||| Sbjct 704109 AAGAGATCCGGAATCCAAAGGGC-ATAGAAAAGATCCCTCGCTCGCACCTCTTCCTTTCC 704051 Query 63338 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63397 || || | ||||| | |||| | | || ||||| |||||| ||||| | || || Sbjct 704050 ATGGTTTTTCCTCAGATCCAAGAACTCGAAAACATCAGCATGCCATGGTTCAATATAGAT 703991 Query 63398 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63457 ||| | | ||||| |||||||| || || || || | || | ||| ||| | || Sbjct 703990 GGCGAAGGCGCCAGGGCGTTTGTTGCCACCTTGGTCGACATAGCGAGCAGTGGCGTCGTA 703931 Query 63458 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63511 | | | |||||| | || || ||||| ||| ||||| |||| ||| || Sbjct 703930 CGCGCGAAGCATTGGCACGATGCCATTTGAGTAACCGTTGGTTCCGGCGATGTA 703877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815190947680