Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 176 6e-39 >seq1 Length=2076502 Score = 176 bits (194), Expect = 6e-39 Identities = 379/559 (68%), Gaps = 12/559 (2%) Strand=Plus/Minus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| |||||| ||||| || ||| || || || || | || || | |||||| ||| Sbjct 1598855 AACAGCAAACACGCGAAGTCCGTGTGAAGCCCTTCATCCCGGCTGATGAGTTCGTTCGAA 1598796 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || ||||| || ||||| | || ||||| || | ||| ||||| || || || ||||| Sbjct 1598795 AATGTGAGGCCAGGCATGAAACCGCGCTTCTTCATCCAGAATATTGAAGCGAACGATCCT 1598736 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || || || || ||||| || || || ||||| | |||||| || || ||| |||| Sbjct 1598735 GAGAAAAATATACCTTCCACAGCAGCGAAGGCGACAAGTCTTTCCGCA-AACGTCGACTG 1598677 Query 36329 ----TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384 || ||||||| | | |||||||||||||| || | |||| ||||| || Sbjct 1598676 CTTGTCTGCTATCCACCTGAGCGCCCAATCGGCCTTGCGCTTGATGGAAGGAATTGTTTC 1598617 Query 36385 TATAGCATTAAAGA-GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 36443 ||||| | ||| | || || || || | |||| | | ||| |||||||| | | Sbjct 1598616 AATAGCGTCAAACAGGAGAG-TTCGCTCGTCCGGATCTCTGATATAGGTATCAATGAGCA 1598558 Query 36444 GACTA-TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 36502 || | || | ||||| || | |||||| || ||||||| || ||||| || | Sbjct 1598557 -ACGAGTAGGTCTCCGAGTGTACGTTTTCTATCATGGTTTGAAAACCATAGAAGCAACGC 1598499 Query 36503 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 36562 ||||| | | ||| || || | |||| ||||| | | ||||| || || || || Sbjct 1598498 GCCTCAGCCACCTGAACCTCGTTGGAAAACCGTTCAACGAGGTTTTCGTTAACGATGCCA 1598439 Query 36563 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGT 36622 ||| ||| || ||||| |||| ||||| || |||||| |||||| | | ||| Sbjct 1598438 TCAGAGGCAGCGAAAAAGGCCAGAACATGAGAGATGAAATATCGTTCGTTCGAGTTGAGT 1598379 Query 36623 ---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 36679 || ||||| || ||| || | || | ||| | ||| || | |||||||| ||| Sbjct 1598378 TTGTTGTTCCAGTCCATGAGGTCATGCGACAGATCTATTTCCTCTGCAGTCCAAAAAGAT 1598319 Query 36680 GCCTCTGCCTTTTTATACA 36698 |||| ||| | ||| |||| Sbjct 1598318 GCCTGTGCTTGTTTGTACA 1598300 Score = 170 bits (188), Expect = 3e-37 Identities = 374/558 (67%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 ||||| |||||| || | ||||| || | ||||| | || ||||| || || | Sbjct 1596622 CATGCAAAATCGGTATGCATGCCCTCATCACGGCTAATGAGCTCATTGGAGAAGGTTAAG 1596681 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || ||||| || || || || || | ||| || ||||| ||||||||||| || ||||| Sbjct 1596682 CCAGGCATGAGACCGCGTTTCTTCATCCAGAAGATGGAGGCAAATGATCCTGAGAAGAAG 1596741 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCACTGTCATGT 36334 || ||||| || || |||||||||| || | || | || | | |||| Sbjct 1596742 ATACCTTCAACAGCGGCAAAGGCAACGAGACGTTCGGCGAAAGTCGAGTGTCGGTCAGCA 1596801 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 |||||| | ||||||| || |||||||| || | ||||| || ||||| | |||| Sbjct 1596802 ATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGCAAGGGATGGTCTCAACGGCATCG 1596861 Query 36395 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 36454 || ||||| | || | ||| || | || || || || | || |||| | Sbjct 1596862 AACAGATACTCCCGCTCGGCAGCATCCTTGATGTAAGTGTCGATGAGGAGGGAATACGTC 1596921 Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514 || || || |||||||| || || || || || |||||||| | |||||||| | | Sbjct 1596922 TCGGAGTGGATGTTTTCCATCATAATCTGGAACCCATAGAAACACCGAGCCTCGGCGACC 1596981 Query 36515 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 36574 || ||||| | |||| ||||| ||||| ||||| ||||| || || ||| ||| Sbjct 1596982 TGAACTTCGTTGGAAAAGCGTTCGAGCAAATTCTCATTGACTATCCCATCGGAGGCAGCA 1597041 Query 36575 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTA----GTTTATTCCA 36630 || || || | || || || || | ||| ||| |||| | || ||||| Sbjct 1597042 AAGAAGGCGAGGACGTGAGAGATGAAGTGGCGCTCG-TTGTCGTTAAGGCGGTTGTTCCA 1597100 Query 36631 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 36690 || | | ||| || || | |||| ||| ||| ||||||| || || || || ||||| Sbjct 1597101 GTCGTGAAGATCCTTCGAGAGGTCCATTTCCTCCGCTGTCCAGAACGAAGCTTCAGCCTT 1597160 Query 36691 TTTATACATATTCCAGAT 36708 |||||||| | |||||| Sbjct 1597161 CTTATACATCTGCCAGAT 1597178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170282489040