Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 seq18 102 8e-17 >seq5 Length=1591901 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 |||||| || || || ||||| || ||| | |||||| ||||| || |||||| | Sbjct 947556 CTCTTTCTGGATATTGTAATCTGACAATGTACGTCCGTCTTCTAGCTGCTTTCCAGCAAA 947615 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 || || ||||||||||||||||| || |||||||| || ||| || ||| | | Sbjct 947616 AATAAGGCGTTGCTGATCGGGAGGAATCCCTTCTTTATCCTGGATCTTCGCTTTCACGTT 947675 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | ||||||| | ||| ||||| | || | |||||||| |||||||| || || Sbjct 947676 GTCAATAGTGTCGGATGACTCGACCTCCAACGTGATGGTCTTGCCCGTCAACGTCTTGAC 947735 Query 139753 GAATATTTGCAT 139764 || || ||||| Sbjct 947736 AAAGATCTGCAT 947747 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || ||||| ||||| ||| | || | ||| |||||||| Sbjct 947773 TGAAGAGTCGACTCCTTCTGAATATTATAGTCGGAAAGAGTACGGCCGTCCTCGAGCTGC 947832 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || ||||| |||| |||||||| |||||||| || |||||||||||||| ||| | || Sbjct 947833 TTGCCAGCGAAGATGAGACGTTGTTGATCGGGGGGAATGCCTTCTTTGTC-CTGAATCTT 947891 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | || | || |||| | ||| ||||| | || | |||||| || || Sbjct 947892 CGCCTTGACATTATCAATGGTATCGGATGACTCAACCTCGAGAGTGATCGTCTTCCCAGT 947951 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 947952 AAGGGTTTTGACGAAGATCTGCAT 947975 >seq18 Length=860724 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||||||||| || | |||| | || || ||||| || ||| Sbjct 790034 GTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGCTGCTTGCCA 789975 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||||||||| ||||| ||||| || ||||| |||||||| ||| | |||| || Sbjct 789974 GCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTC-CTGAATCTTTGCCTT 789916 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | ||| ||||||| ||| | ||||| || || | ||| Sbjct 789915 GACGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCCAGTAAGCGT 789856 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 789855 CTTCACGAAAATCTGCAT 789838 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||||| || ||||| || || ||||| || || Sbjct 789836 CCACCACGAAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCTGAG 789777 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | | |||||||||||| || || || | || |||||||| || ||||| || Sbjct 789776 AGTGTCCGCCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGACGTTGTTGGTCGGGGGGG 789717 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| | || | || | | || | ||||| | | ||| || Sbjct 789716 ATGCCCTCCTTGTC-CTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGATGACTCGAC 789658 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | |||||||| || | || || ||||| || |||||| Sbjct 789657 TTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCATA 789609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062102555200