Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 215 7e-51 >seq1 Length=2076502 Score = 215 bits (238), Expect = 7e-51 Identities = 386/559 (69%), Gaps = 10/559 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 ||||| |||||| |||| ||||| || | ||||| || || ||||| || || | Sbjct 1596622 CATGCAAAATCGGTATGCATGCCCTCATCACGGCTAATGAGCTCATTGGAGAAGGTTAAG 1596681 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || || || || || | ||| || ||||| |||||||| || || |||||| Sbjct 1596682 CCAGGCATGAGACCGCGTTTCTTCATCCAGAAGATGGAGGCAAATGATCCTGAGAAGAAG 1596741 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG---CTGTCATGT 50136 || ||||| || |||||||||||||| || | || | || | | | | |||| Sbjct 1596742 ATACCTTCAACAGCGGCAAAGGCAACGAGACGTTCGGCGAAAGTCGAGTGTCGGTCAGCA 1596801 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||| | ||||||| || |||||||| || | ||||| || || || | ||||| Sbjct 1596802 ATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGCAAGGGATGGTCTCAACGGCATCG 1596861 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 || ||||| | || | ||| || | ||||| ||||| | || |||| | Sbjct 1596862 AACAGATACTCCCGCTCGGCAGCATCCTTGATGTAAGTGTCGATGAGGAGGGAATACGTC 1596921 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || || |||||||| || ||||| || || |||||||| | |||||||| | | Sbjct 1596922 TCGGAGTGGATGTTTTCCATCATAATCTGGAACCCATAGAAACACCGAGCCTCGGCGACC 1596981 Query 50317 TGCACTTCTGTACAAAATCGTTC-AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 || ||||| | |||| ||||| ||| ||||| ||||| ||||| || || ||| || Sbjct 1596982 TGAACTTCGTTGGAAAAGCGTTCGAGC-AAATTCTCATTGACTATCCCATCGGAGGCAGC 1597040 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA----GTTTATTCC 50431 ||| || || | || || || || || ||||| | |||| | || |||| Sbjct 1597041 AAAGAAGGCGAGGACGTGAGAGATGAAGTGGCGCTCGTT-GTCGTTAAGGCGGTTGTTCC 1597099 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | || | | ||| || || | || | ||| ||| ||||||| || || || || |||| Sbjct 1597100 AGTCGTGAAGATCCTTCGAGAGGTCCATTTCCTCCGCTGTCCAGAACGAAGCTTCAGCCT 1597159 Query 50492 TTTTATACATATTCCAGAT 50510 | |||||||| | |||||| Sbjct 1597160 TCTTATACATCTGCCAGAT 1597178 Score = 172 bits (190), Expect = 8e-38 Identities = 378/558 (68%), Gaps = 10/558 (2%) Strand=Plus/Minus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| |||||| ||||| || ||| || || || || | || || |||||||| ||| Sbjct 1598855 AACAGCAAACACGCGAAGTCCGTGTGAAGCCCTTCATCCCGGCTGATGAGTTCGTTCGAA 1598796 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || ||||| || ||||| | || ||||| || | ||| ||||| || || || || || Sbjct 1598795 AATGTGAGGCCAGGCATGAAACCGCGCTTCTTCATCCAGAATATTGAAGCGAACGATCCT 1598736 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC--GC 50128 || || || || ||||| || || || ||||| |||||||| || || | | | || Sbjct 1598735 GAGAAAAATATACCTTCCACAGCAGCGAAGGCGACAAGTCTTTCCGCAAACGTCGACTGC 1598676 Query 50129 T-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | ||| ||||||| | | |||||||||||||| || | |||| || ||||| Sbjct 1598675 TTGTCTGCTATCCACCTGAGCGCCCAATCGGCCTTGCGCTTGATGGAAGGAATTGTTTCA 1598616 Query 50188 ATGGCATTAAAGA-GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 50246 || || | ||| | || || || || | |||| | | ||| ||||| || | | Sbjct 1598615 ATAGCGTCAAACAGGAGAG-TTCGCTCGTCCGGATCTCTGATATAGGTATCAATGAGCA- 1598558 Query 50247 ACTA-TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 50305 || | || | ||||| || | |||||| || | ||||| || ||||| || | | Sbjct 1598557 ACGAGTAGGTCTCCGAGTGTACGTTTTCTATCATGGTTTGAAAACCATAGAAGCAACGCG 1598498 Query 50306 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGT 50365 |||| | | ||| || || | |||| |||||| | | ||||| || || || || | Sbjct 1598497 CCTCAGCCACCTGAACCTCGTTGGAAAACCGTTCAACGAGGTTTTCGTTAACGATGCCAT 1598438 Query 50366 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT- 50424 || ||| || ||||| |||| ||||| || |||| | |||||| | | ||| Sbjct 1598437 CAGAGGCAGCGAAAAAGGCCAGAACATGAGAGATGAAATATCGTTCGTTCGAGTTGAGTT 1598378 Query 50425 --TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 50482 || ||||| || ||| || | || | ||||| ||| || | |||||||| |||| Sbjct 1598377 TGTTGTTCCAGTCCATGAGGTCATGCGACAGATCTATTTCCTCTGCAGTCCAAAAAGATG 1598318 Query 50483 CCTCTGCCTTTTTATACA 50500 ||| ||| | ||| |||| Sbjct 1598317 CCTGTGCTTGTTTGTACA 1598300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266052621840