Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1 158 1e-33 >seq1 Length=2076502 Score = 158 bits (174), Expect = 1e-33 Identities = 369/552 (67%), Gaps = 11/552 (2%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || |||||||| ||| | ||||||||| | ||||| || || || || || ||||| Sbjct 1596622 CATGCAAAATCGGTATGCATGCCCTCATCACGGCTAATGAGCTCATTGGAGAAGGTTAAG 1596681 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||| | || ||||| || | ||| || || | |||||||| || || ||||| Sbjct 1596682 CCAGGCATGAGACCGCGTTTCTTCATCCAGAAGATGGAGGCAAATGATCCTGAGAAGAAG 1596741 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 || || ||||| || ||||| || | | ||||| | || | | | | || | Sbjct 1596742 ATACCTTCAACAGCGGCAAAGGCAACGAGACGTTCGGCGAAAGTCGAGTGTCGGTCAGCA 1596801 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 ||||| | ||||||||| | || || || || || || || |||| |||| Sbjct 1596802 ATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGCAAGGGATGGTCTCAACGGCATCG 1596861 Query 14112 AATAAATATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACA 14169 || | ||| ||| ||| || | ||||| |||| || || || || | | |||| Sbjct 1596862 AACAGATACTCCCGCTCGGCAGCATCCTTGA--TGTAAGTGTCGATGAGGAGGGAATACG 1596919 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC--CGA 14227 | || ||||| ||||||||||| ||||| || ||||| || || | ||| || ||| Sbjct 1596920 TCTCGGAGTGGATGTTTTCCATCATAATCTGGAACCCATAGAAACACCGAGCCTCGGCGA 1596979 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 || || ||||| | |||| | |||| |||||| ||||| ||||| ||||| || Sbjct 1596980 CC--TGAACTTCGTTGGAAAAGCGTTCGAGCAAATTCTCATTGACTATCCCATCGGAGGC 1597037 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT---GAGTTTTTT 14344 ||||| || || | | || || |||| |||| | | ||| | | || || Sbjct 1597038 AGCAAAGAAGGCGAGGACGTGAGAGATGAAGTGGCGCTCGTTGTCGTTAAGGCGGTTGTT 1597097 Query 14345 CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 ||| ||| | |||||| || || || | ||| || ||||||| || ||| |||| Sbjct 1597098 CCAGTCGTGAAGATCCTTCGAGAGGTCCATTTCCTCCGCTGTCCAGAACGAAGCTTCAGC 1597157 Query 14405 TTTTTTATACAT 14416 || |||||||| Sbjct 1597158 CTTCTTATACAT 1597169 Score = 118 bits (130), Expect = 1e-21 Identities = 288/434 (66%), Gaps = 2/434 (0%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 |||||||| || || ||||| || ||||| | || || |||||||| |||||||| Sbjct 1598849 AAACACGCGAAGTCCGTGTGAAGCCCTTCATCCCGGCTGATGAGTTCGTTCGAAAATGTG 1598790 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 | || ||||| || || || || || | ||| ||||||| ||| || || || || || Sbjct 1598789 AGGCCAGGCATGAAACCGCGCTTCTTCATCCAGAATATTGAAGCGAACGATCCTGAGAAA 1598730 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 ||||| || || || ||||| || || | | || ||| |||||| | | |||| Sbjct 1598729 AATATACCTTCCACAGCAGCGAAGGCGACAAGTCTTTCCGCAAACGTCGACTGCTTGTCT 1598670 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | |||||| | ||||| || | || || || || |||||||||||||| Sbjct 1598669 GCTATCCACCTGAGCGCCCAATCGGCCTTGCGCTTGATGGAAGGAATTGTTTCAATAGCG 1598610 Query 14109 TTAAATA-AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 | ||| | | | | | ||| | | | | || || |||||||| || || || Sbjct 1598609 TCAAACAGGAGAGTTC-GCTCGTCCGGATCTCTGATATAGGTATCAATGAGCAACGAGTA 1598551 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 | || ||||||| |||||| || | ||||||||||| ||||| | || || | Sbjct 1598550 GGTCTCCGAGTGTACGTTTTCTATCATGGTTTGAAAACCATAGAAGCAACGCGCCTCAGC 1598491 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 | || || || | |||| | ||| | | ||||| ||||| || |||||| || Sbjct 1598490 CACCTGAACCTCGTTGGAAAACCGTTCAACGAGGTTTTCGTTAACGATGCCATCAGAGGC 1598431 Query 14288 TGCAAAAAATGCCA 14301 || ||||| |||| Sbjct 1598430 AGCGAAAAAGGCCA 1598417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479726165040400