Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 176 6e-39 >seq1 Length=2076502 Score = 176 bits (194), Expect = 6e-39 Identities = 379/559 (68%), Gaps = 12/559 (2%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| |||||| ||||| || ||| || || ||||| | || || | |||||| ||| Sbjct 1598855 AACAGCAAACACGCGAAGTCCGTGTGAAGCCCTTCATCCCGGCTGATGAGTTCGTTCGAA 1598796 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || ||||| || ||||| | || ||||| || | ||| ||||| || || || ||||| Sbjct 1598795 AATGTGAGGCCAGGCATGAAACCGCGCTTCTTCATCCAGAATATTGAAGCGAACGATCCT 1598736 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || || || || ||||| || || || ||||| | |||||| || || ||| |||| Sbjct 1598735 GAGAAAAATATACCTTCCACAGCAGCGAAGGCGACAAGTCTTTCCGCA-AACGTCGACTG 1598677 Query 42236 ----TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 || ||||||| | | |||||||||||||| || | |||| || ||||| Sbjct 1598676 CTTGTCTGCTATCCACCTGAGCGCCCAATCGGCCTTGCGCTTGATGGAAGGAATTGTTTC 1598617 Query 42292 TATGGCATTAAAGA-GATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAA 42350 || || | ||| | || || || || | |||| | | ||| ||||| || | | Sbjct 1598616 AATAGCGTCAAACAGGAGAG-TTCGCTCGTCCGGATCTCTGATATAGGTATCAATGAGCA 1598558 Query 42351 GACTA-TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG 42409 || | || | || || || | |||||| || | ||||| || ||||| || | Sbjct 1598557 -ACGAGTAGGTCTCCGAGTGTACGTTTTCTATCATGGTTTGAAAACCATAGAAGCAACGC 1598499 Query 42410 GCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCG 42469 ||||| | ||||| || || | |||| |||||| | | |||||||| || || || Sbjct 1598498 GCCTCAGCCACCTGAACCTCGTTGGAAAACCGTTCAACGAGGTTTTCGTTAACGATGCCA 1598439 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT 42529 ||| ||| || ||||| |||| ||||| || |||||| ||||| || | | | Sbjct 1598438 TCAGAGGCAGCGAAAAAGGCCAGAACATGAGAGATGAAATATCGTTCGTTCGAGTTGAGT 1598379 Query 42530 ---TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586 || ||||| || ||| || | || | ||||| ||| ||| | |||||||| ||| Sbjct 1598378 TTGTTGTTCCAGTCCATGAGGTCATGCGACAGATCTATTTCCTCTGCAGTCCAAAAAGAT 1598319 Query 42587 GCTTCTGCCTTTTTATACA 42605 || | ||| | ||| |||| Sbjct 1598318 GCCTGTGCTTGTTTGTACA 1598300 Score = 174 bits (192), Expect = 2e-38 Identities = 377/559 (67%), Gaps = 10/559 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 ||||| |||||| |||| |||||||| | ||||| | || ||||| || || | Sbjct 1596622 CATGCAAAATCGGTATGCATGCCCTCATCACGGCTAATGAGCTCATTGGAGAAGGTTAAG 1596681 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || || || || || | ||| || || || ||||||||||| || |||||| Sbjct 1596682 CCAGGCATGAGACCGCGTTTCTTCATCCAGAAGATGGAGGCAAATGATCCTGAGAAGAAG 1596741 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCACTGTCATGT 42241 || ||||| || || |||||||||| || | || | || | | |||| Sbjct 1596742 ATACCTTCAACAGCGGCAAAGGCAACGAGACGTTCGGCGAAAGTCGAGTGTCGGTCAGCA 1596801 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||| | ||||||| || |||||||| || | ||||| || || || | ||||| Sbjct 1596802 ATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGCAAGGGATGGTCTCAACGGCATCG 1596861 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 || ||||| | || | ||| || | || || ||||| | || |||| | Sbjct 1596862 AACAGATACTCCCGCTCGGCAGCATCCTTGATGTAAGTGTCGATGAGGAGGGAATACGTC 1596921 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || |||||||| || ||||| || || |||||||| | ||||||| ||| Sbjct 1596922 TCGGAGTGGATGTTTTCCATCATAATCTGGAACCCATAGAAACACCGAGCCTCGGCGACC 1596981 Query 42422 TGTACTTCTGTACAAAATCGTTC-AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 || ||||| | |||| ||||| ||| ||||| || || ||||| || || ||| || Sbjct 1596982 TGAACTTCGTTGGAAAAGCGTTCGAGC-AAATTCTCATTGACTATCCCATCGGAGGCAGC 1597040 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTCC 42536 ||| || || | || || || || | |||| | ||||| || |||| Sbjct 1597041 AAAGAAGGCGAGGACGTGAGAGATGAAGTGGCGCTCGT-TGTCGTTAAGGCGGTTGTTCC 1597099 Query 42537 AATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596 | || | | ||| || || | || | ||| || | ||||| || || ||||| |||| Sbjct 1597100 AGTCGTGAAGATCCTTCGAGAGGTCCATTTCCTCCGCTGTCCAGAACGAAGCTTCAGCCT 1597159 Query 42597 TTTTATACATATTCCAGAT 42615 | |||||||| | |||||| Sbjct 1597160 TCTTATACATCTGCCAGAT 1597178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136632892560