Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 102 7e-17 >seq1 Length=2076502 Score = 102 bits (112), Expect = 7e-17 Identities = 371/576 (64%), Gaps = 5/576 (1%) Strand=Plus/Plus Query 13133 AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGC 13192 ||||| | |||| | ||||||||||| |||| || ||||| | || || ||| Sbjct 1596604 AGATGGCTGAACAGGAGGCATGCAAAATCGGTATGCATGCCCTCATCACGGCTAATGAGC 1596663 Query 13193 TCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA 13252 || || || || |||| || ||||| || || ||||| || ||||| || || | ||| Sbjct 1596664 TCATTGGAGAAGGTTAAGCCAGGCATGAGACCGCGTTTCTTCATCCAGAAGATGGAGGCA 1596723 Query 13253 AACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATAC 13312 || || || || || || || |||||||| || ||||| || | | | ||| | | Sbjct 1596724 AATGATCCTGAGAAGAAGATACCTTCAACAGCGGCAAAGGCAACGAGACGTTCGGCGAAA 1596783 Query 13313 GTACTATTTTTACTC-TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTT 13371 || | | | | || | |||||| | ||||| | || || | || | ||| Sbjct 1596784 GT-CGAGTGTCGGTCAGCAATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGCAAGG 1596842 Query 13372 CATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATC 13431 || | || | || | || | ||| | || | || || ||||| || Sbjct 1596843 GATGGTCTCAACGGCATCGAACAGATACTCCCGCTCGGCAGCATCCTTGATGTAAGTGTC 1596902 Query 13432 TATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAA 13491 || | | | |||| | || || || || ||||||||| || ||||| ||||| || Sbjct 1596903 GATGAGGAGGGAATACGTCTCGGAGTGGATGTTTTCCATCATAATCTGGAACCCATAGAA 1596962 Query 13492 ACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAAC 13551 ||| | |||||| | |||||||||||| | |||| | ||| || || || || || Sbjct 1596963 ACACCGAGCCTCGGCGACCTGAACTTCGTTGGAAAAGCGTTCGAGCAAATTCTCATTGAC 1597022 Query 13552 TATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC 13611 |||||| || |||||||| || || || | ||| || || | ||||| || Sbjct 1597023 TATCCCATCGGAGGCAGCAAAGAAGGCGAGGACGTGAGAGATGAAGTGGCGCTCGTTGTC 1597082 Query 13612 -TGACAAC--TTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCA 13668 | | | || ||| || ||| ||| || || | || | ||||| | ||||| Sbjct 1597083 GTTAAGGCGGTTGTTCCAGTCGTGAAGATCCTTCGAGAGGTCCATTTCCTCCGCTGTCCA 1597142 Query 13669 AAAAGAAGCAACAGCCTTCTTATACATCATCCATAT 13704 || ||||| ||||||||||||||||| ||| || Sbjct 1597143 GAACGAAGCTTCAGCCTTCTTATACATCTGCCAGAT 1597178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430980792705012