Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 159 8e-34 seq18 141 2e-28 seq1 114 3e-20 >seq5 Length=1591901 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || ||||||||||||||||| || ||||| | ||||| Sbjct 947763 AAGGACGAGATGAAGAGTCGACTCCTTCTGAATATTATAGTCGGAAAGAGTACGGCCGTC 947822 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | |||||||| || || || |||||||| || Sbjct 947823 CTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGATCGGGGGGAATGCCTTCTTTGTC 947882 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | ||||||| | || ||||| || || || || Sbjct 947883 CTGAATCTTCGCCTTGACATTATCAATGGTATCGGATGACTCAACCTCGAGAGTGATCGT 947942 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| |||||||| ||||| || || |||||||| Sbjct 947943 CTTCCCAGTAAGGGTTTTGACGAAGATCTGCAT 947975 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 |||||||| ||||| || || || | || | ||||||||||| || |||||||||||| Sbjct 947557 TCTTTCTGGATATTGTAATCTGACAATGTACGTCCGTCTTCTAGCTGCTTTCCAGCAAAA 947616 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | || ||||| ||||| || |||||||||||||| ||||| ||||| || || Sbjct 947617 ATAAGGCGTTGCTGATCGGGAGGAATCCCTTCTTTATCCTGGATCTTCGCTTTCACGTTG 947676 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || ||| | || ||||| | || || ||||| || || | || || ||| Sbjct 947677 TCAATAGTGTCGGATGACTCGACCTCCAACGTGATGGTCTTGCCCGTCAACGTCTTGACA 947736 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 947737 AAGATCTGCAT 947747 >seq18 Length=860724 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || |||||||| ||||||||||||||||| | || || || || Sbjct 790043 AGATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGC 789984 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || |||||||| || || | ||| || || || || || || ||||| ||||||||| Sbjct 789983 TGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCCTGAATC 789924 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||||| || || || || | || || | || ||||| || ||||||||||| ||| Sbjct 789923 TTTGCCTTGACGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCCA 789864 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || |||||||| Sbjct 789863 GTAAGCGTCTTCACGAAAATCTGCAT 789838 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | ||| || || ||||| ||||| ||||| || ||||| | ||| ||||| ||| Sbjct 789538 AGATGAAGTGTGGACTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCTTCCAGT 789479 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || ||||| || || | ||||| |||||||| || || || || ||||||||| Sbjct 789478 TGCTTACCCGCAAAGATCAGGCGTTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATC 789419 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || || || || | ||| || | || || || || || || ||||| ||| Sbjct 789418 TTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACTTCGAGGGTGATGGTCTTTCCA 789359 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || ||||| ||||| Sbjct 789358 GTGAGTGTCTTAACGAATATTTGCAT 789333 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| || || || | ||||| Sbjct 789822 AAGAACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCTGAGAGTGTCCGCCCGTC 789763 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || ||||| || ||||| || | ||||| || || || || || || || || Sbjct 789762 TTCGAGCTGCTTTCCGGCGAAAATGAGACGTTGTTGGTCGGGGGGGATGCCCTCCTTGTC 789703 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || || || || | ||| || | || || || || || || || Sbjct 789702 CTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGATGACTCGACTTCGAGGGTGATGGT 789643 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| ||||| || || || |||||||| Sbjct 789642 CTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 789610 >seq1 Length=2076502 Score = 114 bits (126), Expect = 3e-20 Identities = 382/587 (65%), Gaps = 8/587 (1%) Strand=Plus/Plus Query 268720 ACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGA 268779 ||| ||| | | |||||| | |||||||||| || || ||||||||||||| ||| Sbjct 1598277 ACATCATTCTCAGATATGGCAGCTGTACAAACAAGCACAGGCATCTTTTTGGACTGCAGA 1598336 Query 268780 AGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA--AAACCAGAA-GAAAG 268836 ||| |||||||||| ||||| | || || ||||| || | ||| ||| ||| | Sbjct 1598337 GGAAATAGATCTGTCGCATGACCTCATGGACTGGAACAACAAACTCAACTCGAACGAACG 1598396 Query 268837 AAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAA 268896 | || || ||| || |||| || ||||| || | |||||| |||||||||||||| Sbjct 1598397 ATATTTCATCTCTCATGTTCTGGCCTTTTTCGCTGCCTCTGATGGCATCGTTAACGAAAA 1598456 Query 268897 TCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATT 268956 || || || ||| | | ||||| ||| | |||| || | || || || || || Sbjct 1598457 CCTCGTTGAACGGTTTTCCAACGAGGTTCAGGTGGCTGAGGCGCGTTGCTTCTATGGTTT 1598516 Query 268957 CCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 || | |||||||| | || || |||| ||| | | || ||||| ||||| Sbjct 1598517 TCAAACCATGATAGAAAACGTACACTCGGAGACCTACTCGTTGCTCATTGATACCTATAT 1598576 Query 269017 -AGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATGAGAACTATGGACTGTGTGA 269075 ||| ||| |||| | || ||| |||| ||| || | | | Sbjct 1598577 CAGA-GATCCGGACGAGCGAACTCTCCTGTTTGACGCTATTGAAACAATTCCTTCCATCA 1598635 Query 269076 GaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGA-TAGC--GCGCCTTACGGAGAAA 269132 || | || ||||| || | |||||| || ||| || | | | |||| Sbjct 1598636 AGCGCAAGGCCGATTGGGCGCTCAGGTGGATAGCAGACAAGCAGTCGACGTTTGCGGAAA 1598695 Query 269133 GGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCT 269192 | | || || || || ||||| ||||||||||| || || || || || || | || | Sbjct 1598696 GACTTGTCGCCTTCGCTGCTGTGGAAGGTATATTTTTCTCAGGATCGTTCGCTTCAATAT 1598755 Query 269193 TTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCA 269252 | ||| ||||||| | || | ||||| || | || || || |||||| | || ||| Sbjct 1598756 TCTGGATGAAGAAGCGCGGTTTCATGCCTGGCCTCACATTTTCGAACGAACTCATCAGCC 1598815 Query 269253 GGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAAT 269299 |||| ||||| | ||| |||||||| ||||| | || ||| || Sbjct 1598816 GGGATGAAGGGCTTCACACGGACTTCGCGTGTTTGCTGTTCACTCAT 1598862 Score = 104 bits (114), Expect = 5e-17 Identities = 132/180 (73%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 269087 GAATGGGCTCTGAAATGGATA----AACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGC 269142 ||||||||||| | ||||| | ||| | | || ||| || ||| | | ||||| Sbjct 1596821 GAATGGGCTCTCAGGTGGATTGCTGACCGACA-CTCGACTTTCGCCGAACGTCTCGTTGC 1596763 Query 269143 TTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAA 269202 ||||||||||| |||||||| ||||| || || || |||||| | ||||| ||| |||| Sbjct 1596762 CTTTGCCGCTGTTGAAGGTATCTTCTTCTCAGGATCATTTGCCTCCATCTTCTGGATGAA 1596703 Query 269203 GAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGG 269262 |||| | || || ||||| || ||||| ||||| || || | || ||| | || || || Sbjct 1596702 GAAACGCGGTCTCATGCCTGGCTTAACCTTCTCCAATGAGCTCATTAGCCGTGATGAGGG 1596643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393885798648