Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq18 105 6e-18 seq5 95.1 1e-14 >seq18 Length=860724 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869 ||| || ||||| || | |||||| || | |||| |||||| ||||| || || Sbjct 790035 AGTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGCTGCTTGCC 789976 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 ||||||| | | ||||| || || ||||| || |||||||| | ||| |||||||| Sbjct 789975 AGCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCCTGAATCTTTGCCTT 789916 Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 |||| | ||| |||||| | || || |||| || || || || |||||||| || Sbjct 789915 GACGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCCAGTAAGCGT 789856 Query 94990 TTTCACAAAGATCTGCAT 95007 ||||| || |||||||| Sbjct 789855 CTTCACGAAAATCTGCAT 789838 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| |||||| | || || | | ||| || || || || || || || ||| Sbjct 789764 TCTTCGAGCTGCTTTCCGGCGAAAATGAGACGTTGTTGGTCGGGGGGGATGCCCTCCTTG 789705 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||||||||| | ||| ||||| | ||||| || | |||||| Sbjct 789704 TCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGATGACTCGACTTCGAGGGTGATG 789645 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || || || ||||||||||| Sbjct 789644 GTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 789610 >seq5 Length=1591901 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| ||||| |||| || | | ||||||||| |||||||| |||||||| Sbjct 947593 TCTTCTAGCTGCTTTCCAGCAAAAATAAGGCGTTGCTGATCGGGAGGAATCCCTTCTTTA 947652 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || || || ||| | | | |||||| | ||||| || | ||||||| Sbjct 947653 TCCTGGATCTTCGCTTTCACGTTGTCAATAGTGTCGGATGACTCGACCTCCAACGTGATG 947712 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || | || || |||||||||||||||| Sbjct 947713 GTCTTGCCCGTCAACGTCTTGACAAAGATCTGCATGC 947749 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869 ||| || ||||| || | ||||| ||| | ||| | ||||| ||||| || || Sbjct 947778 AGTCGACTCCTTCTGAATATTATAGTCGGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCC 947837 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 | ||||| | | ||| ||||| || ||||| ||||||||||| | ||| || ||||| Sbjct 947838 AGCGAAGATGAGACGTTGTTGATCGGGGGGAATGCCTTCTTTGTCCTGAATCTTCGCCTT 947897 Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 ||| | | || || | || || || | ||||| || || |||||||| || Sbjct 947898 GACATTATCAATGGTATCGGATGACTCAACCTCGAGAGTGATCGTCTTCCCAGTAAGGGT 947957 Query 94990 TTTCACAAAGATCTGCATGC 95009 ||| || ||||||||||||| Sbjct 947958 TTTGACGAAGATCTGCATGC 947977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289485286160