Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq13 129 9e-26 seq23 114 2e-21 seq7 89.7 8e-14 >seq13 Length=1228586 Score = 129 bits (142), Expect = 9e-26 Identities = 117/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||||||| |||| |||||| || |||||||| || || || ||||| ||||| Sbjct 249263 GCCAAGCGTCATCGCAAGAT-TCTTCGTGACAACATCCAGGGTATTACGAAGCCCGCTAT 249321 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| ||||||||||| || || |||||| | || || | ||||||| |||| Sbjct 249322 TCGTCGTCTTGCTCGTCGTGGAGGTGTGAAGCGTATTTCCGGGCTCATCTATGAGGAGAC 249381 Query 16552 TCGTGATGTTTTGAAGATCTTCCTC 16576 || | |||||||||||| |||||| Sbjct 249382 CCGAGGTGTTTTGAAGATTTTCCTC 249406 Score = 129 bits (142), Expect = 9e-26 Identities = 117/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||||| ||| |||||| || |||||||| || || || ||||| ||||| Sbjct 273291 GCCAAGCGTCATCGCAAGAT-TCTTCGTGACAACATCCAGGGTATTACGAAGCCCGCTAT 273233 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| ||||||||||| || || |||||| | || || | ||||||| |||| Sbjct 273232 TCGTCGTCTTGCTCGTCGTGGAGGTGTGAAGCGTATTTCCGGGCTCATCTATGAGGAGAC 273173 Query 16552 TCGTGATGTTTTGAAGATCTTCCTC 16576 || | |||||||||||| |||||| Sbjct 273172 CCGAGGTGTTTTGAAGATTTTCCTC 273148 >seq23 Length=668295 Score = 114 bits (126), Expect = 2e-21 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 16468 CCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGT 16527 || ||| ||||||||||| |||||||| || || || ||||||||||| ||||||||| | Sbjct 26898 CCCAGGTATCACCAAGCCCGCTATCCGCCGCCTCGCCCGTCGTGGTGGTGTCAAGCGTAT 26957 Query 16528 CTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTAT 16587 ||||| | |||| || |||| || | ||| | |||||||||||| ||| ||| || Sbjct 26958 TTCTGGCCTCATCTACGAGGAGACCCGCGGTGTCCTCAAGATCTTCCTCGAGAACGTCAT 27017 Query 16588 CCATGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 || || | || ||| ||||||||||| || || Sbjct 27018 CCGCGACTCCGTCACCTACACCGAGCACGCCAAGCG 27053 >seq7 Length=1492718 Score = 89.7 bits (98), Expect = 8e-14 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 ||||||||||| || ||||||||||| || || |||||| ||||||| | | || ||| Sbjct 72074 GCTATCCGTCGCCTCGCTCGTCGTGGAGGTGTGAAGCGTATCTCTGGCCTCATTTACGAA 72133 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTAT 16606 |||| |||| ||| | ||||| ||||| ||| ||||||| ||| | || ||| Sbjct 72134 GAGACCCGTGGTGTCCTCAAGATTTTCCTGGAGAATGTTATCCGTGACTCCGTCACCTAC 72193 Query 16607 ACCGAGCACGCTAAACG 16623 || || || ||||| || Sbjct 72194 ACGGAACATGCTAAGCG 72210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074920222058